Hb_136367_010

Information

Type -
Description -
Location Contig136367: 477-800
Sequence    

Annotation

kegg
ID pop:POPTR_0012s02040g
description POPTRDRAFT_772406; hypothetical protein
nr
ID XP_002318405.2
description hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9I5A0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02040g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_136367_010 0.0 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
2 Hb_086639_060 0.0065498124 - - hypothetical protein JCGZ_25622 [Jatropha curcas]
3 Hb_000232_050 0.0085466069 - - -
4 Hb_007122_030 0.0087309288 - - -
5 Hb_004208_110 0.0088485198 - - -
6 Hb_000513_010 0.0144983411 - - -
7 Hb_032107_010 0.0174775293 - - PREDICTED: uncharacterized protein LOC104225171 [Nicotiana sylvestris]
8 Hb_032252_040 0.017927991 - - -
9 Hb_011457_010 0.0218963127 - - nucleolar protein nop56, putative [Ricinus communis]
10 Hb_110798_010 0.0232652923 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
11 Hb_175651_010 0.0233433381 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
12 Hb_004800_040 0.0244193653 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
13 Hb_001147_100 0.0251579314 - - polyprotein [Citrus endogenous pararetrovirus]
14 Hb_007287_020 0.0254724365 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
15 Hb_009563_020 0.0257067702 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_000425_050 0.0258302433 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
17 Hb_019093_010 0.1104314758 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
18 Hb_000069_680 0.1131927839 - - -
19 Hb_006775_010 0.1258014513 transcription factor TF Family: M-type AGAMOUS [Populus yunnanensis]
20 Hb_000212_220 0.1293990512 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_136367_010 Hb_136367_010 Hb_086639_060 Hb_086639_060 Hb_136367_010--Hb_086639_060 Hb_000232_050 Hb_000232_050 Hb_136367_010--Hb_000232_050 Hb_007122_030 Hb_007122_030 Hb_136367_010--Hb_007122_030 Hb_004208_110 Hb_004208_110 Hb_136367_010--Hb_004208_110 Hb_000513_010 Hb_000513_010 Hb_136367_010--Hb_000513_010 Hb_032107_010 Hb_032107_010 Hb_136367_010--Hb_032107_010 Hb_086639_060--Hb_007122_030 Hb_086639_060--Hb_004208_110 Hb_086639_060--Hb_000232_050 Hb_086639_060--Hb_000513_010 Hb_086639_060--Hb_032107_010 Hb_000232_050--Hb_000513_010 Hb_000232_050--Hb_032107_010 Hb_032252_040 Hb_032252_040 Hb_000232_050--Hb_032252_040 Hb_011457_010 Hb_011457_010 Hb_000232_050--Hb_011457_010 Hb_110798_010 Hb_110798_010 Hb_000232_050--Hb_110798_010 Hb_007122_030--Hb_004208_110 Hb_007122_030--Hb_000232_050 Hb_007122_030--Hb_000513_010 Hb_007122_030--Hb_032107_010 Hb_004208_110--Hb_000232_050 Hb_004208_110--Hb_000513_010 Hb_004208_110--Hb_032107_010 Hb_000513_010--Hb_032107_010 Hb_000513_010--Hb_032252_040 Hb_000513_010--Hb_011457_010 Hb_000513_010--Hb_110798_010 Hb_175651_010 Hb_175651_010 Hb_000513_010--Hb_175651_010 Hb_032107_010--Hb_032252_040 Hb_032107_010--Hb_011457_010 Hb_032107_010--Hb_110798_010 Hb_032107_010--Hb_175651_010 Hb_004800_040 Hb_004800_040 Hb_032107_010--Hb_004800_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.310687 0 0 0.11138 0

CAGE analysis