Hb_000446_060

Information

Type -
Description -
Location Contig446: 89326-91832
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000446_060 0.0 - - -
2 Hb_000276_050 0.2205618235 - - -
3 Hb_000574_550 0.2461710063 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
4 Hb_187513_010 0.2511605159 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
5 Hb_002571_090 0.2523124269 - - -
6 Hb_000296_060 0.2614665904 - - -
7 Hb_003226_290 0.2701991319 - - catalytic, putative [Ricinus communis]
8 Hb_000065_050 0.2815742923 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_000205_340 0.2901206501 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
10 Hb_069783_020 0.2929205955 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
11 Hb_006280_010 0.2937346099 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
12 Hb_012424_010 0.2951891989 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
13 Hb_130194_010 0.2994628476 - - PREDICTED: uncharacterized protein LOC104115665 [Nicotiana tomentosiformis]
14 Hb_177179_010 0.3016309049 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
15 Hb_001652_110 0.30394137 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
16 Hb_003551_030 0.305778741 - - hypothetical protein POPTR_0016s03850g [Populus trichocarpa]
17 Hb_001304_120 0.3075822183 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
18 Hb_005285_010 0.3149823921 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
19 Hb_010883_130 0.3193181569 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210 [Jatropha curcas]
20 Hb_002513_030 0.3230944502 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]

Gene co-expression network

sample Hb_000446_060 Hb_000446_060 Hb_000276_050 Hb_000276_050 Hb_000446_060--Hb_000276_050 Hb_000574_550 Hb_000574_550 Hb_000446_060--Hb_000574_550 Hb_187513_010 Hb_187513_010 Hb_000446_060--Hb_187513_010 Hb_002571_090 Hb_002571_090 Hb_000446_060--Hb_002571_090 Hb_000296_060 Hb_000296_060 Hb_000446_060--Hb_000296_060 Hb_003226_290 Hb_003226_290 Hb_000446_060--Hb_003226_290 Hb_003551_030 Hb_003551_030 Hb_000276_050--Hb_003551_030 Hb_000276_050--Hb_000296_060 Hb_069783_020 Hb_069783_020 Hb_000276_050--Hb_069783_020 Hb_000276_050--Hb_187513_010 Hb_000205_340 Hb_000205_340 Hb_000276_050--Hb_000205_340 Hb_012424_010 Hb_012424_010 Hb_000276_050--Hb_012424_010 Hb_000574_550--Hb_187513_010 Hb_001652_110 Hb_001652_110 Hb_000574_550--Hb_001652_110 Hb_000065_050 Hb_000065_050 Hb_000574_550--Hb_000065_050 Hb_000574_550--Hb_002571_090 Hb_000574_550--Hb_003226_290 Hb_000574_550--Hb_000296_060 Hb_187513_010--Hb_069783_020 Hb_187513_010--Hb_000296_060 Hb_187513_010--Hb_002571_090 Hb_187513_010--Hb_012424_010 Hb_187513_010--Hb_003551_030 Hb_002571_090--Hb_000205_340 Hb_002571_090--Hb_000296_060 Hb_002571_090--Hb_000065_050 Hb_002571_090--Hb_003551_030 Hb_000296_060--Hb_069783_020 Hb_000296_060--Hb_003551_030 Hb_000296_060--Hb_000205_340 Hb_000296_060--Hb_012424_010 Hb_003226_290--Hb_187513_010 Hb_005285_010 Hb_005285_010 Hb_003226_290--Hb_005285_010 Hb_162126_010 Hb_162126_010 Hb_003226_290--Hb_162126_010 Hb_000430_010 Hb_000430_010 Hb_003226_290--Hb_000430_010 Hb_125847_010 Hb_125847_010 Hb_003226_290--Hb_125847_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0390604 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0562322 0.506495 0.18237 0.112373

CAGE analysis