Hb_000054_100

Information

Type -
Description -
Location Contig54: 171846-189238
Sequence    

Annotation

kegg
ID pop:POPTR_0010s25780g
description POPTRDRAFT_228460; hypothetical protein
nr
ID XP_012087710.1
description PREDICTED: metal tolerance protein C4 [Jatropha curcas]
swissprot
ID Q8H1G3
description Metal tolerance protein C4 OS=Arabidopsis thaliana GN=MTPC4 PE=2 SV=1
trembl
ID A0A067JYT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26505 PE=4 SV=1
Gene Ontology
ID GO:0016021
description metal tolerance protein c4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47786: 172298-173707 , PASA_asmbl_47789: 183595-186403 , PASA_asmbl_47790: 186594-186989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000054_100 0.0 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
2 Hb_000815_040 0.070434663 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
3 Hb_003001_120 0.0797765784 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
4 Hb_001936_080 0.0798569922 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
5 Hb_000163_160 0.0824363294 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
6 Hb_004310_130 0.0831264563 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
7 Hb_007778_030 0.0838642955 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
8 Hb_001269_680 0.0843958426 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
9 Hb_143398_010 0.0888754223 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
10 Hb_000329_030 0.0889188101 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
11 Hb_000059_330 0.0897361392 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
12 Hb_011689_080 0.0900662662 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
13 Hb_003058_130 0.0933364492 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
14 Hb_003266_050 0.0933544262 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
15 Hb_010407_040 0.0947588134 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
16 Hb_001604_080 0.0948684064 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
17 Hb_010180_020 0.0954243139 - - hypothetical protein glysoja_030394 [Glycine soja]
18 Hb_009557_070 0.0956045012 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002890_140 0.0970402422 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
20 Hb_000092_100 0.0971715957 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000054_100 Hb_000054_100 Hb_000815_040 Hb_000815_040 Hb_000054_100--Hb_000815_040 Hb_003001_120 Hb_003001_120 Hb_000054_100--Hb_003001_120 Hb_001936_080 Hb_001936_080 Hb_000054_100--Hb_001936_080 Hb_000163_160 Hb_000163_160 Hb_000054_100--Hb_000163_160 Hb_004310_130 Hb_004310_130 Hb_000054_100--Hb_004310_130 Hb_007778_030 Hb_007778_030 Hb_000054_100--Hb_007778_030 Hb_001604_080 Hb_001604_080 Hb_000815_040--Hb_001604_080 Hb_002890_140 Hb_002890_140 Hb_000815_040--Hb_002890_140 Hb_000103_560 Hb_000103_560 Hb_000815_040--Hb_000103_560 Hb_002214_040 Hb_002214_040 Hb_000815_040--Hb_002214_040 Hb_000529_190 Hb_000529_190 Hb_000815_040--Hb_000529_190 Hb_118707_030 Hb_118707_030 Hb_000815_040--Hb_118707_030 Hb_003929_160 Hb_003929_160 Hb_003001_120--Hb_003929_160 Hb_011689_080 Hb_011689_080 Hb_003001_120--Hb_011689_080 Hb_003001_120--Hb_001936_080 Hb_001269_680 Hb_001269_680 Hb_003001_120--Hb_001269_680 Hb_003001_120--Hb_118707_030 Hb_000230_200 Hb_000230_200 Hb_003001_120--Hb_000230_200 Hb_028227_020 Hb_028227_020 Hb_001936_080--Hb_028227_020 Hb_002495_040 Hb_002495_040 Hb_001936_080--Hb_002495_040 Hb_009557_070 Hb_009557_070 Hb_001936_080--Hb_009557_070 Hb_000465_430 Hb_000465_430 Hb_001936_080--Hb_000465_430 Hb_012092_010 Hb_012092_010 Hb_001936_080--Hb_012092_010 Hb_010407_040 Hb_010407_040 Hb_000163_160--Hb_010407_040 Hb_001369_660 Hb_001369_660 Hb_000163_160--Hb_001369_660 Hb_000494_020 Hb_000494_020 Hb_000163_160--Hb_000494_020 Hb_004800_230 Hb_004800_230 Hb_000163_160--Hb_004800_230 Hb_002105_090 Hb_002105_090 Hb_000163_160--Hb_002105_090 Hb_000000_160 Hb_000000_160 Hb_000163_160--Hb_000000_160 Hb_007218_080 Hb_007218_080 Hb_004310_130--Hb_007218_080 Hb_150360_030 Hb_150360_030 Hb_004310_130--Hb_150360_030 Hb_001369_180 Hb_001369_180 Hb_004310_130--Hb_001369_180 Hb_000086_380 Hb_000086_380 Hb_004310_130--Hb_000086_380 Hb_001635_170 Hb_001635_170 Hb_004310_130--Hb_001635_170 Hb_000059_330 Hb_000059_330 Hb_004310_130--Hb_000059_330 Hb_007778_030--Hb_001269_680 Hb_145880_030 Hb_145880_030 Hb_007778_030--Hb_145880_030 Hb_007778_030--Hb_010407_040 Hb_165132_010 Hb_165132_010 Hb_007778_030--Hb_165132_010 Hb_007778_030--Hb_000163_160 Hb_000160_130 Hb_000160_130 Hb_007778_030--Hb_000160_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7519 5.39648 8.74586 7.78077 7.02877 16.8343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.3853 15.4972 9.79888 6.47435 4.85667

CAGE analysis