Gene annotation
Transcriptome id Sobic.010G093400.1
Synonym SSIIa, AtSS2, Sb10g008200, SS2
Functional annotation Starch Synthase IIa (PubMedID : 21853065)
soluble starch synthase 2-3, chloroplast precursor, putative, expressed
UniProt B2Z9X9 , A0A194YI48 , A5Y3U5 , A5Y3H6 , A5Y3T9 , A5Y3U0 , G3FN53
Pfam PF00534 PF08323
Panther DB PTHR12526 PTHR12526:SF371
NCBI CDD -
KEGG Orthology K00703; starch synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G01180 : starch synthase 2
RAP-DB (Rice) LOC_Os06g12450.1 : soluble starch synthase 2-3, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a042604 , Zm00025a033208
Brachypodium KQK18856 , KQJ96814 , KQK01950
Barley HORVU6Hr1G075950.13 , HORVU7Hr1G038420.8 , HORVU7Hr1G038420.9 , HORVU7Hr1G038420.2 , HORVU7Hr1G038420.1 , HORVU7Hr1G038420.4 , HORVU7Hr1G038420.3 , HORVU6Hr1G075950.8 , HORVU6Hr1G075950.9 , HORVU6Hr1G075950.6 , HORVU6Hr1G075950.7 , HORVU6Hr1G075950.4 , HORVU6Hr1G075950.5 , HORVU6Hr1G075950.3 , HORVU6Hr1G075950.14 , HORVU6Hr1G075950.10 , HORVU6Hr1G075950.11 , HORVU6Hr1G075950.12 , HORVU7Hr1G038420.10
Wheat TraesCS6A02G307800 , TraesCS7D02G190100 , TraesCS6D02G287000 , TraesCS7A02G189000 , TraesCS6B02G336400 , TraesCS7B02G093800 , TraesCS7B02G093800
Populus PNS95883 , PNS95882 , PNS95884


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cDNA sequences
Sobic.010G093400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G152500 cytochrome P450, putative, expressed -
2 Sobic.007G204600 Alpha amylase, catalytic domain containing protein, expressed K01214: ISA, isoamylase
3 Sobic.010G273800 starch biosynthesis, 1,4-alpha-glucan branching enzyme(PubMedID : 21853065)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
4 Sobic.003G358200 reticulon domain containing protein, putative, expressed -
5 Sobic.003G230500 glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
6 Sobic.002G420800 stress responsive protein, putative, expressed -
7 Sobic.002G100000 OsFBL33 - F-box domain and LRR containing protein, expressed -
8 Sobic.004G212350 - -
9 Sobic.005G171800 OsFBDUF20 - F-box and DUF domain containing protein, expressed -
10 Sobic.003G307600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
11 Sobic.005G032500 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2
12 Sobic.005G089101 - K08066: NFYC, nuclear transcription factor Y, gamma
13 Sobic.010G181900 expressed protein -
14 Sobic.007G037200 expressed protein -
15 Sobic.007G187100 terpene synthase, putative, expressed -
16 Sobic.004G220900 ethylene-insensitive protein 2, putative, expressed -
17 Sobic.004G294100 ZOS2-14 - C2H2 zinc finger protein, expressed -
18 Sobic.008G168400 GRAS family transcription factor domain containing protein, expressed K14494: DELLA protein
19 Sobic.005G079300 terpene synthase, putative, expressed -
20 Sobic.003G106400 3-beta-hydroxysteroid-Delta-isomerase, putative, expressed K01824: cholestenol Delta-isomerase


Gene co-expression network
sample Sobic010G093400 Sobic010G093400 Sobic007G152500 Sobic007G152500 Sobic010G093400--Sobic007G152500 Sobic007G204600 Sobic007G204600 Sobic010G093400--Sobic007G204600 Sobic010G273800 Sobic010G273800 Sobic010G093400--Sobic010G273800 Sobic003G358200 Sobic003G358200 Sobic010G093400--Sobic003G358200 Sobic003G230500 Sobic003G230500 Sobic010G093400--Sobic003G230500 Sobic002G420800 Sobic002G420800 Sobic010G093400--Sobic002G420800 Sobic002G100000 Sobic002G100000 Sobic010G093400--Sobic002G100000 Sobic004G212350 Sobic004G212350 Sobic010G093400--Sobic004G212350 Sobic005G171800 Sobic005G171800 Sobic010G093400--Sobic005G171800 Sobic007G152500--Sobic010G093400 Sobic007G152500--Sobic002G420800 Sobic007G152500--Sobic003G358200 Sobic005G198700 Sobic005G198700 Sobic007G152500--Sobic005G198700 Sobic007G152500--Sobic007G204600 Sobic002G053100 Sobic002G053100 Sobic007G152500--Sobic002G053100 Sobic005G090500 Sobic005G090500 Sobic007G152500--Sobic005G090500 Sobic001G037800 Sobic001G037800 Sobic007G152500--Sobic001G037800 Sobic006G031000 Sobic006G031000 Sobic007G152500--Sobic006G031000 Sobic003G213100 Sobic003G213100 Sobic007G204600--Sobic003G213100 Sobic002G069800 Sobic002G069800 Sobic007G204600--Sobic002G069800 Sobic003G225800 Sobic003G225800 Sobic007G204600--Sobic003G225800 Sobic005G197000 Sobic005G197000 Sobic007G204600--Sobic005G197000 Sobic002G217000 Sobic002G217000 Sobic007G204600--Sobic002G217000 Sobic009G051201 Sobic009G051201 Sobic007G204600--Sobic009G051201 Sobic005G003100 Sobic005G003100 Sobic007G204600--Sobic005G003100 Sobic002G101200 Sobic002G101200 Sobic007G204600--Sobic002G101200 Sobic005G035500 Sobic005G035500 Sobic007G204600--Sobic005G035500 Sobic006G015800 Sobic006G015800 Sobic010G273800--Sobic006G015800 Sobic003G092600 Sobic003G092600 Sobic010G273800--Sobic003G092600 Sobic004G262100 Sobic004G262100 Sobic010G273800--Sobic004G262100 Sobic001G324800 Sobic001G324800 Sobic010G273800--Sobic001G324800 Sobic010G273800--Sobic010G093400 Sobic002G015800 Sobic002G015800 Sobic010G273800--Sobic002G015800 Sobic009G207500 Sobic009G207500 Sobic010G273800--Sobic009G207500 Sobic001G425900 Sobic001G425900 Sobic010G273800--Sobic001G425900 Sobic004G294100 Sobic004G294100 Sobic010G273800--Sobic004G294100 Sobic003G358200--Sobic010G093400 Sobic003G358200--Sobic002G420800 Sobic003G358200--Sobic007G152500 Sobic006G164000 Sobic006G164000 Sobic003G358200--Sobic006G164000 Sobic001G067000 Sobic001G067000 Sobic003G358200--Sobic001G067000 Sobic001G379000 Sobic001G379000 Sobic003G358200--Sobic001G379000 Sobic001G294600 Sobic001G294600 Sobic003G358200--Sobic001G294600 Sobic001G419700 Sobic001G419700 Sobic003G358200--Sobic001G419700 Sobic010G207400 Sobic010G207400 Sobic003G358200--Sobic010G207400 Sobic005G001500 Sobic005G001500 Sobic003G230500--Sobic005G001500 Sobic003G307600 Sobic003G307600 Sobic003G230500--Sobic003G307600 Sobic009G021300 Sobic009G021300 Sobic003G230500--Sobic009G021300 Sobic003G227800 Sobic003G227800 Sobic003G230500--Sobic003G227800 Sobic002G408700 Sobic002G408700 Sobic003G230500--Sobic002G408700 Sobic010G102900 Sobic010G102900 Sobic003G230500--Sobic010G102900 Sobic005G089101 Sobic005G089101 Sobic003G230500--Sobic005G089101 Sobic001G142600 Sobic001G142600 Sobic003G230500--Sobic001G142600 Sobic008G071900 Sobic008G071900 Sobic003G230500--Sobic008G071900 Sobic007G040000 Sobic007G040000 Sobic002G420800--Sobic007G040000 Sobic009G090250 Sobic009G090250 Sobic002G420800--Sobic009G090250 Sobic005G173900 Sobic005G173900 Sobic002G420800--Sobic005G173900 Sobic001G246400 Sobic001G246400 Sobic002G420800--Sobic001G246400 Sobic005G174500 Sobic005G174500 Sobic002G420800--Sobic005G174500 Sobic007G128400 Sobic007G128400 Sobic002G420800--Sobic007G128400 Sobic001G270600 Sobic001G270600 Sobic002G420800--Sobic001G270600 Sobic002G267700 Sobic002G267700 Sobic002G420800--Sobic002G267700 Sobic006G117300 Sobic006G117300 Sobic002G420800--Sobic006G117300 Sobic002G100000--Sobic005G089101 Sobic002G100000--Sobic004G212350 Sobic007G037200 Sobic007G037200 Sobic002G100000--Sobic007G037200 Sobic010G181900 Sobic010G181900 Sobic002G100000--Sobic010G181900 Sobic005G032500 Sobic005G032500 Sobic002G100000--Sobic005G032500 Sobic002G100000--Sobic002G217000 Sobic008G168400 Sobic008G168400 Sobic002G100000--Sobic008G168400 Sobic004G220900 Sobic004G220900 Sobic002G100000--Sobic004G220900 Sobic007G187100 Sobic007G187100 Sobic002G100000--Sobic007G187100 Sobic004G212350--Sobic007G187100 Sobic009G061900 Sobic009G061900 Sobic004G212350--Sobic009G061900 Sobic004G212350--Sobic002G100000 Sobic004G212350--Sobic008G168400 Sobic005G079300 Sobic005G079300 Sobic004G212350--Sobic005G079300 Sobic001G129900 Sobic001G129900 Sobic004G212350--Sobic001G129900 Sobic002G381600 Sobic002G381600 Sobic004G212350--Sobic002G381600 Sobic004G139700 Sobic004G139700 Sobic004G212350--Sobic004G139700 Sobic002G409300 Sobic002G409300 Sobic004G212350--Sobic002G409300 Sobic005G171800--Sobic007G037200 Sobic005G171800--Sobic008G168400 Sobic005G171800--Sobic007G187100 Sobic005G171800--Sobic005G032500 Sobic005G171800--Sobic009G061900 Sobic005G171800--Sobic004G212350 Sobic002G293100 Sobic002G293100 Sobic005G171800--Sobic002G293100 Sobic005G171800--Sobic002G100000 Sobic005G171800--Sobic010G181900
Octagon: transcription factors


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