Gene annotation
Transcriptome id Sobic.003G358200.1
Synonym Sb03g040030
Functional annotation reticulon domain containing protein, putative, expressed
UniProt C5XPU9
Pfam PF02453
Panther DB PTHR10994 PTHR10994:SF76
NCBI CDD KOG1792; Reticulon
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G54120 : Reticulon family protein
RAP-DB (Rice) LOC_Os01g63240.1 : reticulon domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a026837
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G358200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G093400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Starch synthesis(PubMedID : 31624872)@Starch Synthase IIa(PubMedID : 21853065)@soluble starch synthase 2-3, chloroplast precursor, putative, expressed K00703: starch synthase
2 Sobic.002G420800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@stress responsive protein, putative, expressed -
3 Sobic.007G152500 cytochrome P450, putative, expressed -
4 Sobic.006G164000 expressed protein -
5 Sobic.001G067000 expressed protein K12606: RCD1, CNOT9, CCR4-NOT transcription complex subunit 9
6 Sobic.001G379000 aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
7 Sobic.001G294600 RNA recognition motif containing protein, putative, expressed K14396: PABPN1, polyadenylate-binding protein 2
8 Sobic.001G419700 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
9 Sobic.010G207400 protein kinase domain containing protein, expressed -
10 Sobic.005G110421 - -
11 Sobic.010G273800 "starch biosynthesis, 1,4-alpha-glucan branching enzyme"(PubMedID : 21853065)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
12 Sobic.010G227400 glycosyl hydrolase, family 31, putative, expressed K01187: alpha-glucosidase
13 Sobic.007G128400 expressed protein -
14 Sobic.007G150700 Leucine Rich Repeat family protein, expressed K15082: DNA repair protein RAD7
15 Sobic.005G171800 OsFBDUF20 - F-box and DUF domain containing protein, expressed -
16 Sobic.009G025100 transporter, putative, expressed -
17 Sobic.007G204600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Alpha amylase, catalytic domain containing protein, expressed K01214: ISA, isoamylase
18 Sobic.005G198700 - -
19 Sobic.004G155300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.009G071600 no apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic003G358200 Sobic003G358200 Sobic010G093400 Sobic010G093400 Sobic003G358200--Sobic010G093400 Sobic002G420800 Sobic002G420800 Sobic003G358200--Sobic002G420800 Sobic007G152500 Sobic007G152500 Sobic003G358200--Sobic007G152500 Sobic006G164000 Sobic006G164000 Sobic003G358200--Sobic006G164000 Sobic001G067000 Sobic001G067000 Sobic003G358200--Sobic001G067000 Sobic001G379000 Sobic001G379000 Sobic003G358200--Sobic001G379000 Sobic001G294600 Sobic001G294600 Sobic003G358200--Sobic001G294600 Sobic001G419700 Sobic001G419700 Sobic003G358200--Sobic001G419700 Sobic010G207400 Sobic010G207400 Sobic003G358200--Sobic010G207400 Sobic010G093400--Sobic007G152500 Sobic007G204600 Sobic007G204600 Sobic010G093400--Sobic007G204600 Sobic010G273800 Sobic010G273800 Sobic010G093400--Sobic010G273800 Sobic010G093400--Sobic003G358200 Sobic003G230500 Sobic003G230500 Sobic010G093400--Sobic003G230500 Sobic010G093400--Sobic002G420800 Sobic002G100000 Sobic002G100000 Sobic010G093400--Sobic002G100000 Sobic004G212350 Sobic004G212350 Sobic010G093400--Sobic004G212350 Sobic005G171800 Sobic005G171800 Sobic010G093400--Sobic005G171800 Sobic007G040000 Sobic007G040000 Sobic002G420800--Sobic007G040000 Sobic009G090250 Sobic009G090250 Sobic002G420800--Sobic009G090250 Sobic005G173900 Sobic005G173900 Sobic002G420800--Sobic005G173900 Sobic001G246400 Sobic001G246400 Sobic002G420800--Sobic001G246400 Sobic005G174500 Sobic005G174500 Sobic002G420800--Sobic005G174500 Sobic007G128400 Sobic007G128400 Sobic002G420800--Sobic007G128400 Sobic001G270600 Sobic001G270600 Sobic002G420800--Sobic001G270600 Sobic002G267700 Sobic002G267700 Sobic002G420800--Sobic002G267700 Sobic006G117300 Sobic006G117300 Sobic002G420800--Sobic006G117300 Sobic007G152500--Sobic010G093400 Sobic007G152500--Sobic002G420800 Sobic007G152500--Sobic003G358200 Sobic005G198700 Sobic005G198700 Sobic007G152500--Sobic005G198700 Sobic007G152500--Sobic007G204600 Sobic002G053100 Sobic002G053100 Sobic007G152500--Sobic002G053100 Sobic005G090500 Sobic005G090500 Sobic007G152500--Sobic005G090500 Sobic001G037800 Sobic001G037800 Sobic007G152500--Sobic001G037800 Sobic006G031000 Sobic006G031000 Sobic007G152500--Sobic006G031000 Sobic006G164000--Sobic003G358200 Sobic004G155300 Sobic004G155300 Sobic006G164000--Sobic004G155300 Sobic005G084900 Sobic005G084900 Sobic006G164000--Sobic005G084900 Sobic006G164000--Sobic001G419700 Sobic006G164000--Sobic002G420800 Sobic003G159500 Sobic003G159500 Sobic006G164000--Sobic003G159500 Sobic004G345100 Sobic004G345100 Sobic006G164000--Sobic004G345100 Sobic002G400400 Sobic002G400400 Sobic006G164000--Sobic002G400400 Sobic001G170500 Sobic001G170500 Sobic006G164000--Sobic001G170500 Sobic003G026900 Sobic003G026900 Sobic001G067000--Sobic003G026900 Sobic006G143300 Sobic006G143300 Sobic001G067000--Sobic006G143300 Sobic001G067000--Sobic002G420800 Sobic002G230400 Sobic002G230400 Sobic001G067000--Sobic002G230400 Sobic007G076500 Sobic007G076500 Sobic001G067000--Sobic007G076500 Sobic002G147466 Sobic002G147466 Sobic001G067000--Sobic002G147466 Sobic004G196800 Sobic004G196800 Sobic001G067000--Sobic004G196800 Sobic007G199500 Sobic007G199500 Sobic001G067000--Sobic007G199500 Sobic010G193700 Sobic010G193700 Sobic001G067000--Sobic010G193700 Sobic003G129400 Sobic003G129400 Sobic001G379000--Sobic003G129400 Sobic001G379000--Sobic003G358200 Sobic009G156600 Sobic009G156600 Sobic001G379000--Sobic009G156600 Sobic001G206300 Sobic001G206300 Sobic001G379000--Sobic001G206300 Sobic001G379000--Sobic007G152500 Sobic004G155200 Sobic004G155200 Sobic001G379000--Sobic004G155200 Sobic001G379000--Sobic006G164000 Sobic008G092400 Sobic008G092400 Sobic001G379000--Sobic008G092400 Sobic001G379000--Sobic010G093400 Sobic001G294600--Sobic003G358200 Sobic003G252900 Sobic003G252900 Sobic001G294600--Sobic003G252900 Sobic008G058700 Sobic008G058700 Sobic001G294600--Sobic008G058700 Sobic006G107400 Sobic006G107400 Sobic001G294600--Sobic006G107400 Sobic001G294600--Sobic005G084900 Sobic001G294600--Sobic001G067000 Sobic001G168500 Sobic001G168500 Sobic001G294600--Sobic001G168500 Sobic001G294600--Sobic001G379000 Sobic001G294600--Sobic006G164000 Sobic003G402100 Sobic003G402100 Sobic001G419700--Sobic003G402100 Sobic001G419700--Sobic007G128400 Sobic001G419700--Sobic001G170500 Sobic001G419700--Sobic005G198700 Sobic001G419700--Sobic002G420800 Sobic001G068200 Sobic001G068200 Sobic001G419700--Sobic001G068200 Sobic010G227400 Sobic010G227400 Sobic001G419700--Sobic010G227400 Sobic005G102451 Sobic005G102451 Sobic001G419700--Sobic005G102451 Sobic005G056100 Sobic005G056100 Sobic001G419700--Sobic005G056100 Sobic010G207400--Sobic005G171800 Sobic004G294100 Sobic004G294100 Sobic010G207400--Sobic004G294100 Sobic009G025100 Sobic009G025100 Sobic010G207400--Sobic009G025100 Sobic010G207400--Sobic003G230500 Sobic010G207400--Sobic010G227400 Sobic010G168500 Sobic010G168500 Sobic010G207400--Sobic010G168500 Sobic009G077250 Sobic009G077250 Sobic010G207400--Sobic009G077250 Sobic008G039700 Sobic008G039700 Sobic010G207400--Sobic008G039700 Sobic001G158600 Sobic001G158600 Sobic010G207400--Sobic001G158600
Octagon: transcription factors


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