Gene annotation
Transcriptome id Sobic.008G188700.3
Synonym Sb08g022940
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5YT07
Pfam PF13920
Panther DB PTHR12313:SF11 PTHR12313
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology K10666; E3 ubiquitin-protein ligase RNF5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G19310 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os12g43930.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a004840 , Zm00025a017119
Brachypodium KQJ85641 , KQJ85640 , KQJ85636 , KQJ85637 , KQJ85634 , KQJ85635 , KQJ85638 , KQJ85639
Barley HORVU5Hr1G001400.1 , HORVU5Hr1G001400.2 , HORVU5Hr1G001400.3 , HORVU5Hr1G001400.4 , HORVU5Hr1G001400.5 , HORVU5Hr1G001400.6 , HORVU5Hr1G001400.7 , HORVU5Hr1G001400.8
Wheat -
Populus -


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cDNA sequences
Sobic.008G188700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G026100 Divergent PAP2 family domain containing protein, expressed K09775: uncharacterized protein
2 Sobic.001G420700 clathrin assembly protein, putative, expressed -
3 Sobic.009G195900 OsFBT9 - F-box and tubby domain containing protein, expressed -
4 Sobic.010G105600 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
5 Sobic.004G086100 tetratricopeptide repeat domain containing protein, expressed -
6 Sobic.003G405700 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
7 Sobic.001G105100 neighbor of COX4, putative, expressed -
8 Sobic.003G052400 proline-rich family protein, putative, expressed -
9 Sobic.009G050700 importin subunit alpha, putative, expressed -
10 Sobic.004G079100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
11 Sobic.009G229300 glycosyltransferase family 43 protein, putative, expressed -
12 Sobic.009G195300 DUF803 domain containing, putative, expressed -
13 Sobic.003G119800 Expressed in older stem(PubMedID : 28649278)@no apical meristem protein, putative, expressed -
14 Sobic.001G307900 LYR motif containing protein, putative, expressed K18167: succinate dehydrogenase assembly factor 1
15 Sobic.001G105500 heat shock protein DnaJ, putative, expressed -
16 Sobic.010G068500 cyclic nucleotide-gated ion channel 14, putative, expressed K05391: cyclic nucleotide gated channel, plant
17 Sobic.005G046100 bZIP transcription factor domain containing protein, expressed -
18 Sobic.002G129000 RING zinc finger protein, putative, expressed -
19 Sobic.002G033400 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
20 Sobic.001G391600 plant neutral invertase domain containing protein, expressed -


Gene co-expression network
sample Sobic008G188700 Sobic008G188700 Sobic007G026100 Sobic007G026100 Sobic008G188700--Sobic007G026100 Sobic001G420700 Sobic001G420700 Sobic008G188700--Sobic001G420700 Sobic009G195900 Sobic009G195900 Sobic008G188700--Sobic009G195900 Sobic010G105600 Sobic010G105600 Sobic008G188700--Sobic010G105600 Sobic004G086100 Sobic004G086100 Sobic008G188700--Sobic004G086100 Sobic003G405700 Sobic003G405700 Sobic008G188700--Sobic003G405700 Sobic001G105100 Sobic001G105100 Sobic008G188700--Sobic001G105100 Sobic003G052400 Sobic003G052400 Sobic008G188700--Sobic003G052400 Sobic009G050700 Sobic009G050700 Sobic008G188700--Sobic009G050700 Sobic007G026100--Sobic008G188700 Sobic004G231400 Sobic004G231400 Sobic007G026100--Sobic004G231400 Sobic004G079100 Sobic004G079100 Sobic007G026100--Sobic004G079100 Sobic003G332401 Sobic003G332401 Sobic007G026100--Sobic003G332401 Sobic004G274700 Sobic004G274700 Sobic007G026100--Sobic004G274700 Sobic005G046100 Sobic005G046100 Sobic007G026100--Sobic005G046100 Sobic001G478300 Sobic001G478300 Sobic007G026100--Sobic001G478300 Sobic001G149700 Sobic001G149700 Sobic007G026100--Sobic001G149700 Sobic006G160600 Sobic006G160600 Sobic007G026100--Sobic006G160600 Sobic001G420700--Sobic005G046100 Sobic001G420700--Sobic008G188700 Sobic007G136700 Sobic007G136700 Sobic001G420700--Sobic007G136700 Sobic001G441600 Sobic001G441600 Sobic001G420700--Sobic001G441600 Sobic003G116700 Sobic003G116700 Sobic001G420700--Sobic003G116700 Sobic004G150400 Sobic004G150400 Sobic001G420700--Sobic004G150400 Sobic003G424400 Sobic003G424400 Sobic001G420700--Sobic003G424400 Sobic003G317200 Sobic003G317200 Sobic001G420700--Sobic003G317200 Sobic001G069800 Sobic001G069800 Sobic001G420700--Sobic001G069800 Sobic009G195900--Sobic008G188700 Sobic008G016900 Sobic008G016900 Sobic009G195900--Sobic008G016900 Sobic007G178200 Sobic007G178200 Sobic009G195900--Sobic007G178200 Sobic004G257300 Sobic004G257300 Sobic009G195900--Sobic004G257300 Sobic002G330300 Sobic002G330300 Sobic009G195900--Sobic002G330300 Sobic002G124700 Sobic002G124700 Sobic009G195900--Sobic002G124700 Sobic001G416600 Sobic001G416600 Sobic009G195900--Sobic001G416600 Sobic002G270700 Sobic002G270700 Sobic009G195900--Sobic002G270700 Sobic001G217000 Sobic001G217000 Sobic009G195900--Sobic001G217000 Sobic001G237500 Sobic001G237500 Sobic010G105600--Sobic001G237500 Sobic010G105600--Sobic001G105100 Sobic010G105600--Sobic003G405700 Sobic001G067900 Sobic001G067900 Sobic010G105600--Sobic001G067900 Sobic003G400100 Sobic003G400100 Sobic010G105600--Sobic003G400100 Sobic006G257001 Sobic006G257001 Sobic010G105600--Sobic006G257001 Sobic002G272600 Sobic002G272600 Sobic010G105600--Sobic002G272600 Sobic001G061700 Sobic001G061700 Sobic010G105600--Sobic001G061700 Sobic006G034800 Sobic006G034800 Sobic010G105600--Sobic006G034800 Sobic004G086100--Sobic001G069800 Sobic004G086100--Sobic003G405700 Sobic004G067000 Sobic004G067000 Sobic004G086100--Sobic004G067000 Sobic001G294000 Sobic001G294000 Sobic004G086100--Sobic001G294000 Sobic004G086100--Sobic001G420700 Sobic003G045400 Sobic003G045400 Sobic004G086100--Sobic003G045400 Sobic009G140700 Sobic009G140700 Sobic004G086100--Sobic009G140700 Sobic001G080000 Sobic001G080000 Sobic004G086100--Sobic001G080000 Sobic004G086100--Sobic008G188700 Sobic004G305600 Sobic004G305600 Sobic003G405700--Sobic004G305600 Sobic003G405700--Sobic001G080000 Sobic006G183000 Sobic006G183000 Sobic003G405700--Sobic006G183000 Sobic002G129000 Sobic002G129000 Sobic003G405700--Sobic002G129000 Sobic003G405700--Sobic010G105600 Sobic003G405700--Sobic009G050700 Sobic001G136900 Sobic001G136900 Sobic003G405700--Sobic001G136900 Sobic004G059000 Sobic004G059000 Sobic003G405700--Sobic004G059000 Sobic003G405700--Sobic002G272600 Sobic001G105100--Sobic001G067900 Sobic003G217100 Sobic003G217100 Sobic001G105100--Sobic003G217100 Sobic008G132800 Sobic008G132800 Sobic001G105100--Sobic008G132800 Sobic001G105100--Sobic006G257001 Sobic001G105100--Sobic006G034800 Sobic001G105100--Sobic010G105600 Sobic001G105100--Sobic001G237500 Sobic006G222400 Sobic006G222400 Sobic001G105100--Sobic006G222400 Sobic008G137600 Sobic008G137600 Sobic001G105100--Sobic008G137600 Sobic010G017000 Sobic010G017000 Sobic003G052400--Sobic010G017000 Sobic001G408100 Sobic001G408100 Sobic003G052400--Sobic001G408100 Sobic002G348600 Sobic002G348600 Sobic003G052400--Sobic002G348600 Sobic003G052400--Sobic001G067900 Sobic008G003600 Sobic008G003600 Sobic003G052400--Sobic008G003600 Sobic003G052400--Sobic003G217100 Sobic009G160200 Sobic009G160200 Sobic003G052400--Sobic009G160200 Sobic003G052400--Sobic006G257001 Sobic003G052400--Sobic001G237500 Sobic009G050700--Sobic002G129000 Sobic009G050700--Sobic006G183000 Sobic009G050700--Sobic003G405700 Sobic006G278700 Sobic006G278700 Sobic009G050700--Sobic006G278700 Sobic006G101700 Sobic006G101700 Sobic009G050700--Sobic006G101700 Sobic004G356900 Sobic004G356900 Sobic009G050700--Sobic004G356900 Sobic006G225300 Sobic006G225300 Sobic009G050700--Sobic006G225300 Sobic003G226500 Sobic003G226500 Sobic009G050700--Sobic003G226500 Sobic001G085100 Sobic001G085100 Sobic009G050700--Sobic001G085100
Octagon: transcription factors


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