Gene annotation
| Transcriptome id | Sobic.009G195900.1 |
|---|---|
| Synonym | TLP7, Sb09g025430, AtTLP7 |
| Functional annotation | OsFBT9 - F-box and tubby domain containing protein, expressed |
| UniProt | C5Z0X1 |
| Pfam | PF00646 PF01167 |
| Panther DB | PTHR16517 PTHR16517:SF32 |
| NCBI CDD | KOG2502; Tub family proteins |
| KEGG Orthology | - |
| Gene Ontology | GO:0005515; protein binding |
Orthologs (automatic annotation)
| TAIR | AT1G53320 : tubby like protein 7 |
|---|---|
| RAP-DB (Rice) | LOC_Os05g43850.1 : OsFBT9 - F-box and tubby domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a044218 |
| Brachypodium | KQK05415 , KQK09157 , KQK09158 |
| Barley | HORVU1Hr1G076900.2 , HORVU1Hr1G076900.1 , HORVU0Hr1G001350.1 , HORVU0Hr1G001350.2 , HORVU3Hr1G061930.1 , HORVU3Hr1G061930.4 , HORVU3Hr1G061930.6 , HORVU3Hr1G061930.7 |
| Wheat | TraesCS3D02G270500 , TraesCS1B02G347200 , TraesCS1A02G333900 , TraesCS3B02G304600 , TraesCS1D02G336400 , TraesCS3A02G270800 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G188700 | zinc finger, C3HC4 type domain containing protein, expressed | K10666: E3 ubiquitin-protein ligase RNF5 |
| 2 | Sobic.008G016900 | glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed | K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing) |
| 3 | Sobic.007G178200 | ER lumen protein retaining receptor, putative, expressed | - |
| 4 | Sobic.004G257300 | GPI-anchored protein, putative, expressed | - |
| 5 | Sobic.002G330300 | chitin-inducible gibberellin-responsive protein, putative, expressed | - |
| 6 | Sobic.002G124700 | up-regulated by silicon application(PubMedID : 24879770)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed | K09872: aquaporin PIP |
| 7 | Sobic.001G416600 | NAD dependent epimerase/dehydratase family domain containing protein, expressed | K12450: UDP-glucose 4,6-dehydratase |
| 8 | Sobic.002G270700 | OsRhmbd16 - Putative Rhomboid homologue, expressed | - |
| 9 | Sobic.001G217000 | DUF584 domain containing protein, putative, expressed | - |
| 10 | Sobic.003G108200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 11 | Sobic.007G223300 | transcription factor BIM2, putative, expressed | - |
| 12 | Sobic.001G420700 | clathrin assembly protein, putative, expressed | - |
| 13 | Sobic.002G379400 | CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K14498: serine/threonine-protein kinase SRK2 |
| 14 | Sobic.001G335400 | protein of unknown function DUF1675 domain containing protein, expressed | - |
| 15 | Sobic.001G283500 | VHS and GAT domain containing protein, expressed | - |
| 16 | Sobic.002G076866 | - | - |
| 17 | Sobic.001G105100 | neighbor of COX4, putative, expressed | - |
| 18 | Sobic.004G220400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Lyase(PubMedID : 30367619)@phenylalanine ammonia-lyase, putative, expressed | K10775: phenylalanine ammonia-lyase |
| 19 | Sobic.007G226100 | 14-3-3 protein, putative, expressed | K06630: 14-3-3 protein epsilon |
| 20 | Sobic.002G333600 | universal stress protein domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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