Hb_172983_010

Information

Type -
Description -
Location Contig172983: 8424-10170
Sequence    

Annotation

kegg
ID rcu:RCOM_1712450
description hypothetical protein
nr
ID XP_002524160.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDU1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1712450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172983_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000248_080 0.0886793715 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
3 Hb_137862_020 0.0921620089 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
4 Hb_136973_020 0.0953659492 - - -
5 Hb_023712_020 0.0957080736 transcription factor TF Family: ERF hypothetical protein JCGZ_20669 [Jatropha curcas]
6 Hb_000277_030 0.0986364622 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
7 Hb_005928_010 0.1098019831 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
8 Hb_002163_070 0.1132614214 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
9 Hb_003847_090 0.1164099796 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
10 Hb_009083_020 0.1165620856 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
11 Hb_001002_020 0.1215651012 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000170_260 0.1228954018 - - amino acid transporter, putative [Ricinus communis]
13 Hb_019429_020 0.1233335481 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_006197_010 0.1242334868 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
15 Hb_006083_010 0.1255996836 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
16 Hb_010252_010 0.1260377189 - - -
17 Hb_057721_010 0.1269841289 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_160950_010 0.129836238 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
19 Hb_054165_010 0.131993265 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
20 Hb_004788_030 0.1363097125 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_172983_010 Hb_172983_010 Hb_000248_080 Hb_000248_080 Hb_172983_010--Hb_000248_080 Hb_137862_020 Hb_137862_020 Hb_172983_010--Hb_137862_020 Hb_136973_020 Hb_136973_020 Hb_172983_010--Hb_136973_020 Hb_023712_020 Hb_023712_020 Hb_172983_010--Hb_023712_020 Hb_000277_030 Hb_000277_030 Hb_172983_010--Hb_000277_030 Hb_005928_010 Hb_005928_010 Hb_172983_010--Hb_005928_010 Hb_000248_080--Hb_136973_020 Hb_000248_080--Hb_137862_020 Hb_009083_020 Hb_009083_020 Hb_000248_080--Hb_009083_020 Hb_002163_070 Hb_002163_070 Hb_000248_080--Hb_002163_070 Hb_000248_080--Hb_005928_010 Hb_160950_010 Hb_160950_010 Hb_000248_080--Hb_160950_010 Hb_137862_020--Hb_002163_070 Hb_137862_020--Hb_023712_020 Hb_057721_010 Hb_057721_010 Hb_137862_020--Hb_057721_010 Hb_137862_020--Hb_009083_020 Hb_010252_010 Hb_010252_010 Hb_137862_020--Hb_010252_010 Hb_136973_020--Hb_005928_010 Hb_136973_020--Hb_000277_030 Hb_001002_020 Hb_001002_020 Hb_136973_020--Hb_001002_020 Hb_054165_010 Hb_054165_010 Hb_136973_020--Hb_054165_010 Hb_136973_020--Hb_137862_020 Hb_006197_010 Hb_006197_010 Hb_023712_020--Hb_006197_010 Hb_023712_020--Hb_057721_010 Hb_023712_020--Hb_000248_080 Hb_022465_010 Hb_022465_010 Hb_023712_020--Hb_022465_010 Hb_023712_020--Hb_002163_070 Hb_000277_030--Hb_005928_010 Hb_000277_030--Hb_001002_020 Hb_000277_030--Hb_054165_010 Hb_003847_090 Hb_003847_090 Hb_000277_030--Hb_003847_090 Hb_006083_010 Hb_006083_010 Hb_000277_030--Hb_006083_010 Hb_005928_010--Hb_001002_020 Hb_005928_010--Hb_054165_010 Hb_005928_010--Hb_003847_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0766376 2.54938 5.94305 4.87908 0.100874 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis