Hb_011316_060

Information

Type -
Description -
Location Contig11316: 22298-24065
Sequence    

Annotation

kegg
ID rcu:RCOM_1498560
description alpha-l-fucosidase, putative (EC:3.2.1.51)
nr
ID XP_002510887.1
description alpha-l-fucosidase, putative [Ricinus communis]
swissprot
ID Q8GW72
description Alpha-L-fucosidase 1 OS=Arabidopsis thaliana GN=FUC1 PE=1 SV=2
trembl
ID B9R9L2
description Alpha-l-fucosidase, putative OS=Ricinus communis GN=RCOM_1498560 PE=4 SV=1
Gene Ontology
ID GO:0004560
description alpha-l-fucosidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03941: 22838-23542
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011316_060 0.0 - - alpha-l-fucosidase, putative [Ricinus communis]
2 Hb_000141_020 0.1298355316 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
3 Hb_001159_080 0.1319101016 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
4 Hb_006198_180 0.1334077663 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X1 [Jatropha curcas]
5 Hb_005569_020 0.136562433 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000191_020 0.1453521607 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001096_110 0.1515549508 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
8 Hb_001232_140 0.1540320496 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
9 Hb_000099_130 0.1549256 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
10 Hb_020419_020 0.1577515932 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
11 Hb_024714_060 0.1588904089 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
12 Hb_012545_050 0.1614931528 - - PREDICTED: serine carboxypeptidase II-3-like [Jatropha curcas]
13 Hb_003581_260 0.1629186101 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
14 Hb_001135_210 0.1635003098 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
15 Hb_001157_010 0.1665924215 - - deoxyhypusine synthase, putative [Ricinus communis]
16 Hb_003504_020 0.1669424903 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
17 Hb_000562_040 0.1691987357 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
18 Hb_017987_060 0.1716212005 - - hypothetical protein JCGZ_15971 [Jatropha curcas]
19 Hb_000802_100 0.1717956212 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
20 Hb_006569_100 0.1726790266 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]

Gene co-expression network

sample Hb_011316_060 Hb_011316_060 Hb_000141_020 Hb_000141_020 Hb_011316_060--Hb_000141_020 Hb_001159_080 Hb_001159_080 Hb_011316_060--Hb_001159_080 Hb_006198_180 Hb_006198_180 Hb_011316_060--Hb_006198_180 Hb_005569_020 Hb_005569_020 Hb_011316_060--Hb_005569_020 Hb_000191_020 Hb_000191_020 Hb_011316_060--Hb_000191_020 Hb_001096_110 Hb_001096_110 Hb_011316_060--Hb_001096_110 Hb_003504_020 Hb_003504_020 Hb_000141_020--Hb_003504_020 Hb_000125_030 Hb_000125_030 Hb_000141_020--Hb_000125_030 Hb_000406_120 Hb_000406_120 Hb_000141_020--Hb_000406_120 Hb_000099_130 Hb_000099_130 Hb_000141_020--Hb_000099_130 Hb_001956_070 Hb_001956_070 Hb_000141_020--Hb_001956_070 Hb_000141_020--Hb_001159_080 Hb_001159_080--Hb_001096_110 Hb_003581_260 Hb_003581_260 Hb_001159_080--Hb_003581_260 Hb_000327_220 Hb_000327_220 Hb_001159_080--Hb_000327_220 Hb_001159_080--Hb_000125_030 Hb_001159_080--Hb_000099_130 Hb_012545_050 Hb_012545_050 Hb_006198_180--Hb_012545_050 Hb_017987_060 Hb_017987_060 Hb_006198_180--Hb_017987_060 Hb_006198_180--Hb_000191_020 Hb_006198_180--Hb_000141_020 Hb_000784_030 Hb_000784_030 Hb_006198_180--Hb_000784_030 Hb_005569_020--Hb_001096_110 Hb_005569_020--Hb_000141_020 Hb_010407_180 Hb_010407_180 Hb_005569_020--Hb_010407_180 Hb_005569_020--Hb_000406_120 Hb_005569_020--Hb_001159_080 Hb_000108_070 Hb_000108_070 Hb_005569_020--Hb_000108_070 Hb_000035_430 Hb_000035_430 Hb_000191_020--Hb_000035_430 Hb_089100_020 Hb_089100_020 Hb_000191_020--Hb_089100_020 Hb_024714_060 Hb_024714_060 Hb_000191_020--Hb_024714_060 Hb_000896_120 Hb_000896_120 Hb_000191_020--Hb_000896_120 Hb_001604_030 Hb_001604_030 Hb_000191_020--Hb_001604_030 Hb_001268_080 Hb_001268_080 Hb_000191_020--Hb_001268_080 Hb_001096_110--Hb_003581_260 Hb_001096_110--Hb_010407_180 Hb_001279_340 Hb_001279_340 Hb_001096_110--Hb_001279_340 Hb_001096_110--Hb_000108_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.584845 0.213099 0.392058 0.746713 0.0922589 0.298322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38721 1.5279 2.32483 0.32909 0.0507611

CAGE analysis