Hb_007332_010

Information

Type -
Description -
Location Contig7332: 36799-40171
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007220718.1
description hypothetical protein PRUPE_ppa022673mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007332_010 0.0 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
2 Hb_033123_010 0.0002805573 - - Putative polyprotein [Oryza sativa Japonica Group]
3 Hb_010051_010 0.0003295267 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_001446_050 0.0003551645 - - putative polyprotein [Oryza sativa Japonica Group]
5 Hb_013781_010 0.0004423748 - - hypothetical protein VITISV_030726 [Vitis vinifera]
6 Hb_015337_010 0.0004772464 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_025864_010 0.0006383785 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_007014_020 0.0007399227 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_147844_010 0.0007561267 - - putative 60S ribosomal protein L37 [Aegilops tauschii]
10 Hb_001579_120 0.0008431228 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_010907_010 0.000850562 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
12 Hb_007719_020 0.000925862 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
13 Hb_004667_010 0.0009532613 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_114981_010 0.0009925863 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_005617_050 0.0010098117 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105167812 [Sesamum indicum]
16 Hb_012535_030 0.001058591 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_144850_070 0.0010667874 - - OSJNBa0032N05.11 [Oryza sativa Japonica Group]
18 Hb_034066_010 0.0011117829 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_010132_070 0.0011397511 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_007251_010 0.0012597031 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]

Gene co-expression network

sample Hb_007332_010 Hb_007332_010 Hb_033123_010 Hb_033123_010 Hb_007332_010--Hb_033123_010 Hb_010051_010 Hb_010051_010 Hb_007332_010--Hb_010051_010 Hb_001446_050 Hb_001446_050 Hb_007332_010--Hb_001446_050 Hb_013781_010 Hb_013781_010 Hb_007332_010--Hb_013781_010 Hb_015337_010 Hb_015337_010 Hb_007332_010--Hb_015337_010 Hb_025864_010 Hb_025864_010 Hb_007332_010--Hb_025864_010 Hb_033123_010--Hb_010051_010 Hb_033123_010--Hb_001446_050 Hb_033123_010--Hb_025864_010 Hb_007014_020 Hb_007014_020 Hb_033123_010--Hb_007014_020 Hb_147844_010 Hb_147844_010 Hb_033123_010--Hb_147844_010 Hb_010051_010--Hb_001446_050 Hb_010051_010--Hb_025864_010 Hb_010051_010--Hb_007014_020 Hb_010051_010--Hb_147844_010 Hb_001446_050--Hb_025864_010 Hb_001446_050--Hb_007014_020 Hb_001446_050--Hb_147844_010 Hb_013781_010--Hb_015337_010 Hb_001579_120 Hb_001579_120 Hb_013781_010--Hb_001579_120 Hb_005617_050 Hb_005617_050 Hb_013781_010--Hb_005617_050 Hb_013781_010--Hb_033123_010 Hb_013781_010--Hb_010051_010 Hb_015337_010--Hb_001579_120 Hb_015337_010--Hb_005617_050 Hb_015337_010--Hb_033123_010 Hb_001770_030 Hb_001770_030 Hb_015337_010--Hb_001770_030 Hb_025864_010--Hb_007014_020 Hb_025864_010--Hb_147844_010 Hb_010907_010 Hb_010907_010 Hb_025864_010--Hb_010907_010 Hb_007719_020 Hb_007719_020 Hb_025864_010--Hb_007719_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0046153 0.0248165

CAGE analysis