Hb_001770_030

Information

Type -
Description -
Location Contig1770: 17627-24646
Sequence    

Annotation

kegg
ID crb:CARUB_v10008216mg
description hypothetical protein
nr
ID KJB64294.1
description hypothetical protein B456_010G041100, partial [Gossypium raimondii]
swissprot
ID Q7F8Q9
description Leucine-rich repeat receptor protein kinase MSL1 OS=Oryza sativa subsp. japonica GN=MSL1 PE=2 SV=1
trembl
ID A0A0D2U5X7
description Gossypium raimondii chromosome 10, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_010G041100 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001770_030 0.0 - - hypothetical protein B456_010G041100, partial [Gossypium raimondii]
2 Hb_005617_050 0.000263637 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105167812 [Sesamum indicum]
3 Hb_001579_120 0.000430326 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_015337_010 0.0007962024 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_013781_010 0.000831074 - - hypothetical protein VITISV_030726 [Vitis vinifera]
6 Hb_002115_090 0.0011197936 - - PREDICTED: uncharacterized protein LOC104590556 [Nelumbo nucifera]
7 Hb_032572_020 0.001163493 - - -
8 Hb_007332_010 0.0012734484 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
9 Hb_004346_020 0.0013065492 - - conserved hypothetical protein [Ricinus communis]
10 Hb_171554_030 0.0013065492 - - -
11 Hb_033123_010 0.0015540052 - - Putative polyprotein [Oryza sativa Japonica Group]
12 Hb_010051_010 0.0016029745 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_001446_050 0.0016286122 - - putative polyprotein [Oryza sativa Japonica Group]
14 Hb_012595_030 0.0016426498 - - -
15 Hb_025864_010 0.0019118253 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_008673_010 0.0019895271 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
17 Hb_007014_020 0.0020133693 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
18 Hb_147844_010 0.0020295732 - - putative 60S ribosomal protein L37 [Aegilops tauschii]
19 Hb_010907_010 0.0021240082 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
20 Hb_166645_010 0.0021947178 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105123834 [Populus euphratica]

Gene co-expression network

sample Hb_001770_030 Hb_001770_030 Hb_005617_050 Hb_005617_050 Hb_001770_030--Hb_005617_050 Hb_001579_120 Hb_001579_120 Hb_001770_030--Hb_001579_120 Hb_015337_010 Hb_015337_010 Hb_001770_030--Hb_015337_010 Hb_013781_010 Hb_013781_010 Hb_001770_030--Hb_013781_010 Hb_002115_090 Hb_002115_090 Hb_001770_030--Hb_002115_090 Hb_032572_020 Hb_032572_020 Hb_001770_030--Hb_032572_020 Hb_005617_050--Hb_001579_120 Hb_005617_050--Hb_015337_010 Hb_005617_050--Hb_013781_010 Hb_007332_010 Hb_007332_010 Hb_005617_050--Hb_007332_010 Hb_033123_010 Hb_033123_010 Hb_005617_050--Hb_033123_010 Hb_001579_120--Hb_015337_010 Hb_001579_120--Hb_013781_010 Hb_001579_120--Hb_007332_010 Hb_001579_120--Hb_033123_010 Hb_015337_010--Hb_013781_010 Hb_015337_010--Hb_007332_010 Hb_015337_010--Hb_033123_010 Hb_013781_010--Hb_007332_010 Hb_013781_010--Hb_033123_010 Hb_010051_010 Hb_010051_010 Hb_013781_010--Hb_010051_010 Hb_002115_090--Hb_032572_020 Hb_004346_020 Hb_004346_020 Hb_002115_090--Hb_004346_020 Hb_171554_030 Hb_171554_030 Hb_002115_090--Hb_171554_030 Hb_012595_030 Hb_012595_030 Hb_002115_090--Hb_012595_030 Hb_008673_010 Hb_008673_010 Hb_002115_090--Hb_008673_010 Hb_166645_010 Hb_166645_010 Hb_002115_090--Hb_166645_010 Hb_032572_020--Hb_004346_020 Hb_032572_020--Hb_171554_030 Hb_032572_020--Hb_012595_030 Hb_032572_020--Hb_008673_010 Hb_032572_020--Hb_166645_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.025088 0.133792

CAGE analysis