Hb_013781_010

Information

Type -
Description -
Location Contig13781: 884-4749
Sequence    

Annotation

kegg
ID cam:101511496
description uncharacterized LOC101511496
nr
ID CAN59913.1
description hypothetical protein VITISV_030726 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BQS5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027695 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013781_010 0.0 - - hypothetical protein VITISV_030726 [Vitis vinifera]
2 Hb_015337_010 3.48716e-05 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_001579_120 0.0004007481 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_007332_010 0.0004423748 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
5 Hb_005617_050 0.0005674371 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105167812 [Sesamum indicum]
6 Hb_033123_010 0.0007229321 - - Putative polyprotein [Oryza sativa Japonica Group]
7 Hb_010051_010 0.0007719015 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_001446_050 0.0007975393 - - putative polyprotein [Oryza sativa Japonica Group]
9 Hb_001770_030 0.000831074 - - hypothetical protein B456_010G041100, partial [Gossypium raimondii]
10 Hb_025864_010 0.001080753 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_007014_020 0.0011822972 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
12 Hb_147844_010 0.0011985012 - - putative 60S ribosomal protein L37 [Aegilops tauschii]
13 Hb_010907_010 0.0012929364 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
14 Hb_007719_020 0.0013682363 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
15 Hb_004667_010 0.0013956356 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_114981_010 0.0014349605 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_012535_030 0.0015009651 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_144850_070 0.0015091616 - - OSJNBa0032N05.11 [Oryza sativa Japonica Group]
19 Hb_034066_010 0.001554157 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_010132_070 0.0015821252 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_013781_010 Hb_013781_010 Hb_015337_010 Hb_015337_010 Hb_013781_010--Hb_015337_010 Hb_001579_120 Hb_001579_120 Hb_013781_010--Hb_001579_120 Hb_007332_010 Hb_007332_010 Hb_013781_010--Hb_007332_010 Hb_005617_050 Hb_005617_050 Hb_013781_010--Hb_005617_050 Hb_033123_010 Hb_033123_010 Hb_013781_010--Hb_033123_010 Hb_010051_010 Hb_010051_010 Hb_013781_010--Hb_010051_010 Hb_015337_010--Hb_001579_120 Hb_015337_010--Hb_007332_010 Hb_015337_010--Hb_005617_050 Hb_015337_010--Hb_033123_010 Hb_001770_030 Hb_001770_030 Hb_015337_010--Hb_001770_030 Hb_001579_120--Hb_005617_050 Hb_001579_120--Hb_001770_030 Hb_001579_120--Hb_007332_010 Hb_001579_120--Hb_033123_010 Hb_007332_010--Hb_033123_010 Hb_007332_010--Hb_010051_010 Hb_001446_050 Hb_001446_050 Hb_007332_010--Hb_001446_050 Hb_025864_010 Hb_025864_010 Hb_007332_010--Hb_025864_010 Hb_005617_050--Hb_001770_030 Hb_005617_050--Hb_007332_010 Hb_005617_050--Hb_033123_010 Hb_033123_010--Hb_010051_010 Hb_033123_010--Hb_001446_050 Hb_033123_010--Hb_025864_010 Hb_007014_020 Hb_007014_020 Hb_033123_010--Hb_007014_020 Hb_147844_010 Hb_147844_010 Hb_033123_010--Hb_147844_010 Hb_010051_010--Hb_001446_050 Hb_010051_010--Hb_025864_010 Hb_010051_010--Hb_007014_020 Hb_010051_010--Hb_147844_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0051898 0.0278258

CAGE analysis