Hb_033123_010

Information

Type -
Description -
Location Contig33123: 2135-6513
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa024392mg
description hypothetical protein
nr
ID AAM00956.1
description Putative polyprotein [Oryza sativa Japonica Group]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID Q8S837
description Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0053D03.20 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033123_010 0.0 - - Putative polyprotein [Oryza sativa Japonica Group]
2 Hb_010051_010 4.89694e-05 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_001446_050 7.46072e-05 - - putative polyprotein [Oryza sativa Japonica Group]
4 Hb_007332_010 0.0002805573 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
5 Hb_025864_010 0.0003578212 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_007014_020 0.0004593655 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
7 Hb_147844_010 0.0004755695 - - putative 60S ribosomal protein L37 [Aegilops tauschii]
8 Hb_010907_010 0.0005700048 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
9 Hb_007719_020 0.0006453048 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
10 Hb_004667_010 0.0006727042 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_114981_010 0.0007120292 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_013781_010 0.0007229321 - - hypothetical protein VITISV_030726 [Vitis vinifera]
13 Hb_015337_010 0.0007578037 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_012535_030 0.0007780338 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_144850_070 0.0007862303 - - OSJNBa0032N05.11 [Oryza sativa Japonica Group]
16 Hb_034066_010 0.0008312258 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_010132_070 0.000859194 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_007251_010 0.0009791461 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
19 Hb_001579_120 0.0011236799 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_007167_100 0.0012070553 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_033123_010 Hb_033123_010 Hb_010051_010 Hb_010051_010 Hb_033123_010--Hb_010051_010 Hb_001446_050 Hb_001446_050 Hb_033123_010--Hb_001446_050 Hb_007332_010 Hb_007332_010 Hb_033123_010--Hb_007332_010 Hb_025864_010 Hb_025864_010 Hb_033123_010--Hb_025864_010 Hb_007014_020 Hb_007014_020 Hb_033123_010--Hb_007014_020 Hb_147844_010 Hb_147844_010 Hb_033123_010--Hb_147844_010 Hb_010051_010--Hb_001446_050 Hb_010051_010--Hb_025864_010 Hb_010051_010--Hb_007332_010 Hb_010051_010--Hb_007014_020 Hb_010051_010--Hb_147844_010 Hb_001446_050--Hb_025864_010 Hb_001446_050--Hb_007332_010 Hb_001446_050--Hb_007014_020 Hb_001446_050--Hb_147844_010 Hb_013781_010 Hb_013781_010 Hb_007332_010--Hb_013781_010 Hb_015337_010 Hb_015337_010 Hb_007332_010--Hb_015337_010 Hb_007332_010--Hb_025864_010 Hb_025864_010--Hb_007014_020 Hb_025864_010--Hb_147844_010 Hb_010907_010 Hb_010907_010 Hb_025864_010--Hb_010907_010 Hb_007719_020 Hb_007719_020 Hb_025864_010--Hb_007719_020 Hb_007014_020--Hb_147844_010 Hb_007014_020--Hb_010907_010 Hb_007014_020--Hb_007719_020 Hb_004667_010 Hb_004667_010 Hb_007014_020--Hb_004667_010 Hb_114981_010 Hb_114981_010 Hb_007014_020--Hb_114981_010 Hb_147844_010--Hb_010907_010 Hb_147844_010--Hb_007719_020 Hb_147844_010--Hb_004667_010 Hb_147844_010--Hb_114981_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00425181 0.0229036

CAGE analysis