Hb_001579_120

Information

Type -
Description -
Location Contig1579: 91131-94047
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q9UR07
description Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_120 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_005617_050 0.000166689 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105167812 [Sesamum indicum]
3 Hb_015337_010 0.0003658765 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_013781_010 0.0004007481 - - hypothetical protein VITISV_030726 [Vitis vinifera]
5 Hb_001770_030 0.000430326 - - hypothetical protein B456_010G041100, partial [Gossypium raimondii]
6 Hb_007332_010 0.0008431228 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
7 Hb_033123_010 0.0011236799 - - Putative polyprotein [Oryza sativa Japonica Group]
8 Hb_010051_010 0.0011726492 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_001446_050 0.001198287 - - putative polyprotein [Oryza sativa Japonica Group]
10 Hb_025864_010 0.0014815005 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_002115_090 0.0015501189 - - PREDICTED: uncharacterized protein LOC104590556 [Nelumbo nucifera]
12 Hb_007014_020 0.0015830446 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
13 Hb_032572_020 0.0015938183 - - -
14 Hb_147844_010 0.0015992485 - - putative 60S ribosomal protein L37 [Aegilops tauschii]
15 Hb_010907_010 0.0016936836 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
16 Hb_004346_020 0.0017368743 - - conserved hypothetical protein [Ricinus communis]
17 Hb_171554_030 0.0017368743 - - -
18 Hb_007719_020 0.0017689835 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
19 Hb_004667_010 0.0017963827 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_114981_010 0.0018357076 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_001579_120 Hb_001579_120 Hb_005617_050 Hb_005617_050 Hb_001579_120--Hb_005617_050 Hb_015337_010 Hb_015337_010 Hb_001579_120--Hb_015337_010 Hb_013781_010 Hb_013781_010 Hb_001579_120--Hb_013781_010 Hb_001770_030 Hb_001770_030 Hb_001579_120--Hb_001770_030 Hb_007332_010 Hb_007332_010 Hb_001579_120--Hb_007332_010 Hb_033123_010 Hb_033123_010 Hb_001579_120--Hb_033123_010 Hb_005617_050--Hb_001770_030 Hb_005617_050--Hb_015337_010 Hb_005617_050--Hb_013781_010 Hb_005617_050--Hb_007332_010 Hb_005617_050--Hb_033123_010 Hb_015337_010--Hb_013781_010 Hb_015337_010--Hb_007332_010 Hb_015337_010--Hb_033123_010 Hb_015337_010--Hb_001770_030 Hb_013781_010--Hb_007332_010 Hb_013781_010--Hb_033123_010 Hb_010051_010 Hb_010051_010 Hb_013781_010--Hb_010051_010 Hb_001770_030--Hb_013781_010 Hb_002115_090 Hb_002115_090 Hb_001770_030--Hb_002115_090 Hb_032572_020 Hb_032572_020 Hb_001770_030--Hb_032572_020 Hb_007332_010--Hb_033123_010 Hb_007332_010--Hb_010051_010 Hb_001446_050 Hb_001446_050 Hb_007332_010--Hb_001446_050 Hb_025864_010 Hb_025864_010 Hb_007332_010--Hb_025864_010 Hb_033123_010--Hb_010051_010 Hb_033123_010--Hb_001446_050 Hb_033123_010--Hb_025864_010 Hb_007014_020 Hb_007014_020 Hb_033123_010--Hb_007014_020 Hb_147844_010 Hb_147844_010 Hb_033123_010--Hb_147844_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00571062 0.030539

CAGE analysis