Hb_005218_040

Information

Type -
Description -
Location Contig5218: 18956-20744
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14640g
description POPTRDRAFT_803014; 1-aminocyclopropane-1-carboxylic acid synthase family protein
nr
ID XP_012079466.1
description PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
swissprot
ID Q00257
description 1-aminocyclopropane-1-carboxylate synthase CMA101 OS=Cucurbita maxima GN=ACS2 PE=2 SV=1
trembl
ID B9HFU1
description 1-aminocyclopropane-1-carboxylic acid synthase family protein OS=Populus trichocarpa GN=POPTR_0007s14640g PE=3 SV=1
Gene Ontology
ID GO:0016847
description 1-aminocyclopropane-1-carboxylate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005218_040 0.0 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
2 Hb_001726_030 0.2404872994 - - Ferulic acid 5-hydroxylase 1 [Theobroma cacao]
3 Hb_000455_100 0.2658497998 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_008643_010 0.2825501271 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
5 Hb_000007_110 0.2833951943 - - PREDICTED: peroxidase 11 [Jatropha curcas]
6 Hb_008779_010 0.2851975396 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
7 Hb_176979_010 0.2891632901 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
8 Hb_064885_050 0.2908045603 - - PREDICTED: BAHD acyltransferase At5g47980-like [Populus euphratica]
9 Hb_002849_150 0.3014032681 - - hypothetical protein JCGZ_14367 [Jatropha curcas]
10 Hb_030291_030 0.3014097089 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
11 Hb_000926_130 0.3119008455 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_159769_010 0.3134901331 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
13 Hb_000243_330 0.3149141902 - - conserved hypothetical protein [Ricinus communis]
14 Hb_020025_020 0.3149856719 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
15 Hb_001101_030 0.3182153964 - - hypothetical protein JCGZ_00046 [Jatropha curcas]
16 Hb_000500_110 0.3241581191 - - Blue copper protein precursor, putative [Ricinus communis]
17 Hb_005539_250 0.3251750539 - - -
18 Hb_001956_030 0.3257772766 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Populus euphratica]
19 Hb_039655_010 0.3258886267 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like [Malus domestica]
20 Hb_008092_090 0.3266915444 - - PREDICTED: uncharacterized protein LOC105637756 [Jatropha curcas]

Gene co-expression network

sample Hb_005218_040 Hb_005218_040 Hb_001726_030 Hb_001726_030 Hb_005218_040--Hb_001726_030 Hb_000455_100 Hb_000455_100 Hb_005218_040--Hb_000455_100 Hb_008643_010 Hb_008643_010 Hb_005218_040--Hb_008643_010 Hb_000007_110 Hb_000007_110 Hb_005218_040--Hb_000007_110 Hb_008779_010 Hb_008779_010 Hb_005218_040--Hb_008779_010 Hb_176979_010 Hb_176979_010 Hb_005218_040--Hb_176979_010 Hb_125644_010 Hb_125644_010 Hb_001726_030--Hb_125644_010 Hb_001726_030--Hb_176979_010 Hb_064885_050 Hb_064885_050 Hb_001726_030--Hb_064885_050 Hb_008092_090 Hb_008092_090 Hb_001726_030--Hb_008092_090 Hb_020025_020 Hb_020025_020 Hb_001726_030--Hb_020025_020 Hb_000926_130 Hb_000926_130 Hb_000455_100--Hb_000926_130 Hb_000455_100--Hb_008643_010 Hb_000455_100--Hb_008779_010 Hb_000056_330 Hb_000056_330 Hb_000455_100--Hb_000056_330 Hb_002849_150 Hb_002849_150 Hb_000455_100--Hb_002849_150 Hb_006683_010 Hb_006683_010 Hb_000455_100--Hb_006683_010 Hb_008643_010--Hb_008779_010 Hb_001638_220 Hb_001638_220 Hb_008643_010--Hb_001638_220 Hb_054362_010 Hb_054362_010 Hb_008643_010--Hb_054362_010 Hb_008643_010--Hb_006683_010 Hb_127993_010 Hb_127993_010 Hb_008643_010--Hb_127993_010 Hb_000135_050 Hb_000135_050 Hb_000007_110--Hb_000135_050 Hb_000010_120 Hb_000010_120 Hb_000007_110--Hb_000010_120 Hb_159769_010 Hb_159769_010 Hb_000007_110--Hb_159769_010 Hb_000007_110--Hb_176979_010 Hb_006478_180 Hb_006478_180 Hb_000007_110--Hb_006478_180 Hb_003538_020 Hb_003538_020 Hb_000007_110--Hb_003538_020 Hb_008779_010--Hb_001638_220 Hb_008779_010--Hb_054362_010 Hb_008779_010--Hb_006683_010 Hb_008779_010--Hb_127993_010 Hb_146023_010 Hb_146023_010 Hb_176979_010--Hb_146023_010 Hb_176979_010--Hb_064885_050 Hb_176979_010--Hb_125644_010 Hb_002917_010 Hb_002917_010 Hb_176979_010--Hb_002917_010 Hb_001442_080 Hb_001442_080 Hb_176979_010--Hb_001442_080 Hb_000939_030 Hb_000939_030 Hb_176979_010--Hb_000939_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0184916 0.0148085 0 0.0110226 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.049937 0.213003 0

CAGE analysis