Hb_001430_070

Information

Type -
Description -
Location Contig1430: 89753-94129
Sequence    

Annotation

kegg
ID rcu:RCOM_1517990
description hypothetical protein
nr
ID XP_002524051.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDI2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1517990 PE=4 SV=1
Gene Ontology
ID GO:0016301
description intracellular protein transport protein uso1 isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11360: 89758-94399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001430_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000066_080 0.0843272031 - - PREDICTED: mRNA cap guanine-N7 methyltransferase 2 isoform X2 [Jatropha curcas]
3 Hb_002217_300 0.0856651613 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
4 Hb_000003_250 0.0940376361 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
5 Hb_001696_010 0.0954078397 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
6 Hb_004079_030 0.0960529518 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
7 Hb_000898_040 0.0994118988 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_005490_030 0.1012931755 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
9 Hb_000185_040 0.1020332369 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
10 Hb_002005_020 0.1022003788 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000409_020 0.103030226 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
12 Hb_000749_220 0.1030325952 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
13 Hb_001377_490 0.1037166789 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
14 Hb_002435_120 0.1050750846 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000832_020 0.1050833977 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
16 Hb_001635_060 0.1052136522 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
17 Hb_000907_080 0.1056720736 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
18 Hb_164010_030 0.1059721443 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
19 Hb_002740_180 0.1061336546 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000445_040 0.1064176991 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001430_070 Hb_001430_070 Hb_000066_080 Hb_000066_080 Hb_001430_070--Hb_000066_080 Hb_002217_300 Hb_002217_300 Hb_001430_070--Hb_002217_300 Hb_000003_250 Hb_000003_250 Hb_001430_070--Hb_000003_250 Hb_001696_010 Hb_001696_010 Hb_001430_070--Hb_001696_010 Hb_004079_030 Hb_004079_030 Hb_001430_070--Hb_004079_030 Hb_000898_040 Hb_000898_040 Hb_001430_070--Hb_000898_040 Hb_002620_020 Hb_002620_020 Hb_000066_080--Hb_002620_020 Hb_119600_070 Hb_119600_070 Hb_000066_080--Hb_119600_070 Hb_000066_080--Hb_000003_250 Hb_000783_020 Hb_000783_020 Hb_000066_080--Hb_000783_020 Hb_003697_040 Hb_003697_040 Hb_000066_080--Hb_003697_040 Hb_000749_220 Hb_000749_220 Hb_000066_080--Hb_000749_220 Hb_000832_020 Hb_000832_020 Hb_002217_300--Hb_000832_020 Hb_089032_040 Hb_089032_040 Hb_002217_300--Hb_089032_040 Hb_002217_300--Hb_000898_040 Hb_000185_040 Hb_000185_040 Hb_002217_300--Hb_000185_040 Hb_005490_030 Hb_005490_030 Hb_002217_300--Hb_005490_030 Hb_002740_180 Hb_002740_180 Hb_002217_300--Hb_002740_180 Hb_001014_030 Hb_001014_030 Hb_000003_250--Hb_001014_030 Hb_005463_100 Hb_005463_100 Hb_000003_250--Hb_005463_100 Hb_002046_180 Hb_002046_180 Hb_000003_250--Hb_002046_180 Hb_010128_080 Hb_010128_080 Hb_000003_250--Hb_010128_080 Hb_000876_070 Hb_000876_070 Hb_000003_250--Hb_000876_070 Hb_001799_210 Hb_001799_210 Hb_000003_250--Hb_001799_210 Hb_029510_050 Hb_029510_050 Hb_001696_010--Hb_029510_050 Hb_004225_050 Hb_004225_050 Hb_001696_010--Hb_004225_050 Hb_001696_010--Hb_002740_180 Hb_002809_050 Hb_002809_050 Hb_001696_010--Hb_002809_050 Hb_028089_010 Hb_028089_010 Hb_001696_010--Hb_028089_010 Hb_002685_210 Hb_002685_210 Hb_001696_010--Hb_002685_210 Hb_000138_110 Hb_000138_110 Hb_004079_030--Hb_000138_110 Hb_002027_040 Hb_002027_040 Hb_004079_030--Hb_002027_040 Hb_001811_030 Hb_001811_030 Hb_004079_030--Hb_001811_030 Hb_000059_050 Hb_000059_050 Hb_004079_030--Hb_000059_050 Hb_002005_020 Hb_002005_020 Hb_004079_030--Hb_002005_020 Hb_004079_030--Hb_119600_070 Hb_000409_020 Hb_000409_020 Hb_000898_040--Hb_000409_020 Hb_000207_250 Hb_000207_250 Hb_000898_040--Hb_000207_250 Hb_000907_080 Hb_000907_080 Hb_000898_040--Hb_000907_080 Hb_004109_090 Hb_004109_090 Hb_000898_040--Hb_004109_090 Hb_000080_190 Hb_000080_190 Hb_000898_040--Hb_000080_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.36658 8.62037 5.86504 12.6373 14.4786 16.1956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1646 13.7937 29.6154 9.79042 11.9739

CAGE analysis