Gene annotation
Transcriptome id Sobic.009G156200.1
Synonym Sb09g021950
Functional annotation starch binding domain containing protein, putative, expressed
UniProt C5YYU1
Pfam PF00686
Panther DB PTHR10357 PTHR10357:SF142
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:2001070; starch binding GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT5G01260 : Carbohydrate-binding-like fold
RAP-DB (Rice) LOC_Os05g37450.1 : starch binding domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a043839
Brachypodium -
Barley -
Wheat TraesCS1A02G278200 , TraesCS1A02G278200 , TraesCS1A02G278200 , TraesCS1B02G287100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G156200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G262100 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed K00021: hydroxymethylglutaryl-CoA reductase (NADPH)
2 Sobic.001G053700 PAZ domain containing protein, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
3 Sobic.002G349000 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3
4 Sobic.002G360900 GASR9 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
5 Sobic.003G042200 uncharacterized protein At4g06744 precursor, putative, expressed -
6 Sobic.004G340566 - -
7 Sobic.002G381750 - K03094: SKP1, S-phase kinase-associated protein 1
8 Sobic.009G234500 similar to Cold acclimation protein COR413-TM1(PubMedID : 29862293)@cold acclimation protein WCOR413, putative, expressed -
9 Sobic.003G062101 - -
10 Sobic.008G064250 - -
11 Sobic.001G509100 expressed protein -
12 Sobic.001G324800 cysteine proteinase inhibitor 8 precursor, putative, expressed -
13 Sobic.002G221100 expressed protein -
14 Sobic.010G273800 starch biosynthesis, 1,4-alpha-glucan branching enzyme(PubMedID : 21853065)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
15 Sobic.008G011400 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2
16 Sobic.008G174500 expressed protein -
17 Sobic.002G099866 - -
18 Sobic.004G037300 cycloartenol synthase, putative, expressed -
19 Sobic.003G101200 paired amphipathic helix repeat-containing protein, putative, expressed -
20 Sobic.009G218100 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB


Gene co-expression network
sample Sobic009G156200 Sobic009G156200 Sobic004G262100 Sobic004G262100 Sobic009G156200--Sobic004G262100 Sobic001G053700 Sobic001G053700 Sobic009G156200--Sobic001G053700 Sobic002G349000 Sobic002G349000 Sobic009G156200--Sobic002G349000 Sobic002G360900 Sobic002G360900 Sobic009G156200--Sobic002G360900 Sobic003G042200 Sobic003G042200 Sobic009G156200--Sobic003G042200 Sobic004G340566 Sobic004G340566 Sobic009G156200--Sobic004G340566 Sobic002G381750 Sobic002G381750 Sobic009G156200--Sobic002G381750 Sobic009G234500 Sobic009G234500 Sobic009G156200--Sobic009G234500 Sobic003G062101 Sobic003G062101 Sobic009G156200--Sobic003G062101 Sobic002G015800 Sobic002G015800 Sobic004G262100--Sobic002G015800 Sobic003G092600 Sobic003G092600 Sobic004G262100--Sobic003G092600 Sobic001G324800 Sobic001G324800 Sobic004G262100--Sobic001G324800 Sobic001G509100 Sobic001G509100 Sobic004G262100--Sobic001G509100 Sobic004G262100--Sobic002G360900 Sobic001G261529 Sobic001G261529 Sobic004G262100--Sobic001G261529 Sobic005G083280 Sobic005G083280 Sobic004G262100--Sobic005G083280 Sobic003G101200 Sobic003G101200 Sobic004G262100--Sobic003G101200 Sobic010G022600 Sobic010G022600 Sobic004G262100--Sobic010G022600 Sobic003G402100 Sobic003G402100 Sobic001G053700--Sobic003G402100 Sobic001G053700--Sobic002G360900 Sobic001G053700--Sobic002G381750 Sobic010G180200 Sobic010G180200 Sobic001G053700--Sobic010G180200 Sobic001G394900 Sobic001G394900 Sobic001G053700--Sobic001G394900 Sobic004G254400 Sobic004G254400 Sobic001G053700--Sobic004G254400 Sobic001G053700--Sobic001G324800 Sobic001G259300 Sobic001G259300 Sobic001G053700--Sobic001G259300 Sobic003G323000 Sobic003G323000 Sobic001G053700--Sobic003G323000 Sobic002G221100 Sobic002G221100 Sobic002G349000--Sobic002G221100 Sobic002G349000--Sobic001G324800 Sobic006G143300 Sobic006G143300 Sobic002G349000--Sobic006G143300 Sobic004G218000 Sobic004G218000 Sobic002G349000--Sobic004G218000 Sobic002G354800 Sobic002G354800 Sobic002G349000--Sobic002G354800 Sobic004G014100 Sobic004G014100 Sobic002G349000--Sobic004G014100 Sobic002G349000--Sobic009G156200 Sobic001G425900 Sobic001G425900 Sobic002G349000--Sobic001G425900 Sobic002G349000--Sobic004G262100 Sobic008G088881 Sobic008G088881 Sobic002G360900--Sobic008G088881 Sobic010G107300 Sobic010G107300 Sobic002G360900--Sobic010G107300 Sobic005G083160 Sobic005G083160 Sobic002G360900--Sobic005G083160 Sobic001G233900 Sobic001G233900 Sobic002G360900--Sobic001G233900 Sobic005G226150 Sobic005G226150 Sobic002G360900--Sobic005G226150 Sobic002G360900--Sobic010G022600 Sobic002G360900--Sobic001G324800 Sobic002G360900--Sobic003G323000 Sobic003G303500 Sobic003G303500 Sobic002G360900--Sobic003G303500 Sobic008G174500 Sobic008G174500 Sobic003G042200--Sobic008G174500 Sobic001G194100 Sobic001G194100 Sobic003G042200--Sobic001G194100 Sobic003G042200--Sobic003G062101 Sobic003G042200--Sobic009G156200 Sobic006G184200 Sobic006G184200 Sobic003G042200--Sobic006G184200 Sobic003G379900 Sobic003G379900 Sobic003G042200--Sobic003G379900 Sobic010G009600 Sobic010G009600 Sobic003G042200--Sobic010G009600 Sobic003G042200--Sobic002G349000 Sobic002G238800 Sobic002G238800 Sobic003G042200--Sobic002G238800 Sobic009G132400 Sobic009G132400 Sobic004G340566--Sobic009G132400 Sobic002G099866 Sobic002G099866 Sobic004G340566--Sobic002G099866 Sobic004G340566--Sobic003G101200 Sobic004G340566--Sobic001G509100 Sobic004G340566--Sobic001G324800 Sobic004G340566--Sobic004G262100 Sobic004G340566--Sobic009G234500 Sobic001G452100 Sobic001G452100 Sobic004G340566--Sobic001G452100 Sobic002G266600 Sobic002G266600 Sobic004G340566--Sobic002G266600 Sobic008G011400 Sobic008G011400 Sobic002G381750--Sobic008G011400 Sobic003G027700 Sobic003G027700 Sobic002G381750--Sobic003G027700 Sobic002G381750--Sobic001G259300 Sobic002G381750--Sobic003G323000 Sobic001G530400 Sobic001G530400 Sobic002G381750--Sobic001G530400 Sobic003G342000 Sobic003G342000 Sobic002G381750--Sobic003G342000 Sobic009G061800 Sobic009G061800 Sobic002G381750--Sobic009G061800 Sobic002G291132 Sobic002G291132 Sobic002G381750--Sobic002G291132 Sobic008G013100 Sobic008G013100 Sobic002G381750--Sobic008G013100 Sobic009G234500--Sobic001G261529 Sobic009G234500--Sobic002G266600 Sobic009G234500--Sobic002G099866 Sobic009G234500--Sobic002G015800 Sobic001G264600 Sobic001G264600 Sobic009G234500--Sobic001G264600 Sobic009G234500--Sobic001G509100 Sobic003G035001 Sobic003G035001 Sobic009G234500--Sobic003G035001 Sobic009G234500--Sobic003G092600 Sobic009G234500--Sobic005G083280 Sobic003G062101--Sobic008G174500 Sobic003G062101--Sobic001G194100 Sobic003G062101--Sobic003G042200 Sobic003G062101--Sobic004G262100 Sobic004G065800 Sobic004G065800 Sobic003G062101--Sobic004G065800 Sobic003G062101--Sobic009G156200 Sobic010G223500 Sobic010G223500 Sobic003G062101--Sobic010G223500 Sobic004G339900 Sobic004G339900 Sobic003G062101--Sobic004G339900 Sobic004G071050 Sobic004G071050 Sobic003G062101--Sobic004G071050
Octagon: transcription factors


© 2022 RIKEN, All rights reserved.