Gene annotation
Transcriptome id Sobic.004G319600.1,Sobic.004G319600.2,Sobic.004G319600.3
Synonym Sb04g035020
Functional annotation polygalacturonase, putative, expressed
UniProt C5XTN3
Pfam PF12708
Panther DB PTHR31339 PTHR31339:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G19170 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os09g26800.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a033026 , Zm00025a033021
Brachypodium KQK01576 , KQK01577 , KQK01578
Barley -
Wheat TraesCS6B02G371200 , TraesCS6B02G371200 , TraesCS6D02G320600 , TraesCS6A02G340000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G007600 glycosyltransferase protein, putative, expressed -
2 Sobic.009G026101 - -
3 Sobic.006G075000 Late embryogenesis abundant hydroxyproline-rich glycoprotein("PubMedID : 26759170,PubMedID : 24597475")@harpin-induced protein 1 domain containing protein, expressed -
4 Sobic.007G091900 ATP binding protein, putative, expressed -
5 Sobic.004G111100 GDSL-like lipase/acylhydrolase, putative, expressed -
6 Sobic.007G047300 encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed K05279: flavonol 3-O-methyltransferase
7 Sobic.001G208600 receptor kinase like protein, putative, expressed -
8 Sobic.002G075500 CESA8 - cellulose synthase, expressed K10999: cellulose synthase A
9 Sobic.003G254700 glycosyltransferase family 43 protein, putative, expressed -
10 Sobic.003G099166 - -
11 Sobic.009G032600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.003G366300 protein kinase domain containing protein, expressed K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5
13 Sobic.003G352700 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
14 Sobic.001G133900 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
15 Sobic.009G059500 solute carrier family 35 member E3, putative, expressed K15285: solute carrier family 35, member E3
16 Sobic.004G051300 galactosyltransferase, putative, expressed -
17 Sobic.001G484000 hydrolase, alpha/beta fold family protein, putative, expressed -
18 Sobic.009G125900 expressed protein -
19 Sobic.009G215000 - -
20 Sobic.009G063400 "CESA1-like or CESA10-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA1 - cellulose synthase, expressed K10999: cellulose synthase A


Gene co-expression network
sample Sobic004G319600 Sobic004G319600 Sobic004G007600 Sobic004G007600 Sobic004G319600--Sobic004G007600 Sobic009G026101 Sobic009G026101 Sobic004G319600--Sobic009G026101 Sobic006G075000 Sobic006G075000 Sobic004G319600--Sobic006G075000 Sobic007G091900 Sobic007G091900 Sobic004G319600--Sobic007G091900 Sobic004G111100 Sobic004G111100 Sobic004G319600--Sobic004G111100 Sobic007G047300 Sobic007G047300 Sobic004G319600--Sobic007G047300 Sobic001G208600 Sobic001G208600 Sobic004G319600--Sobic001G208600 Sobic002G075500 Sobic002G075500 Sobic004G319600--Sobic002G075500 Sobic003G254700 Sobic003G254700 Sobic004G319600--Sobic003G254700 Sobic001G133900 Sobic001G133900 Sobic004G007600--Sobic001G133900 Sobic004G007600--Sobic003G254700 Sobic004G007600--Sobic009G026101 Sobic004G007600--Sobic004G319600 Sobic004G007600--Sobic004G111100 Sobic004G007600--Sobic006G075000 Sobic009G125900 Sobic009G125900 Sobic004G007600--Sobic009G125900 Sobic004G007600--Sobic002G075500 Sobic006G156600 Sobic006G156600 Sobic004G007600--Sobic006G156600 Sobic009G026101--Sobic001G133900 Sobic009G063400 Sobic009G063400 Sobic009G026101--Sobic009G063400 Sobic009G026101--Sobic009G125900 Sobic009G246700 Sobic009G246700 Sobic009G026101--Sobic009G246700 Sobic009G206500 Sobic009G206500 Sobic009G026101--Sobic009G206500 Sobic009G026101--Sobic002G075500 Sobic009G026101--Sobic006G075000 Sobic009G026101--Sobic003G254700 Sobic010G096100 Sobic010G096100 Sobic009G026101--Sobic010G096100 Sobic006G075000--Sobic010G096100 Sobic006G075000--Sobic001G208600 Sobic001G484000 Sobic001G484000 Sobic006G075000--Sobic001G484000 Sobic009G226900 Sobic009G226900 Sobic006G075000--Sobic009G226900 Sobic002G072200 Sobic002G072200 Sobic006G075000--Sobic002G072200 Sobic003G099166 Sobic003G099166 Sobic006G075000--Sobic003G099166 Sobic003G352700 Sobic003G352700 Sobic006G075000--Sobic003G352700 Sobic006G075000--Sobic009G026101 Sobic002G338400 Sobic002G338400 Sobic006G075000--Sobic002G338400 Sobic001G302300 Sobic001G302300 Sobic007G091900--Sobic001G302300 Sobic003G270400 Sobic003G270400 Sobic007G091900--Sobic003G270400 Sobic007G119500 Sobic007G119500 Sobic007G091900--Sobic007G119500 Sobic003G366300 Sobic003G366300 Sobic007G091900--Sobic003G366300 Sobic001G406700 Sobic001G406700 Sobic007G091900--Sobic001G406700 Sobic004G047600 Sobic004G047600 Sobic007G091900--Sobic004G047600 Sobic003G387500 Sobic003G387500 Sobic007G091900--Sobic003G387500 Sobic007G091900--Sobic004G319600 Sobic003G378800 Sobic003G378800 Sobic007G091900--Sobic003G378800 Sobic010G101900 Sobic010G101900 Sobic004G111100--Sobic010G101900 Sobic004G111100--Sobic007G047300 Sobic004G111100--Sobic003G254700 Sobic009G162300 Sobic009G162300 Sobic004G111100--Sobic009G162300 Sobic003G227700 Sobic003G227700 Sobic004G111100--Sobic003G227700 Sobic001G360700 Sobic001G360700 Sobic004G111100--Sobic001G360700 Sobic002G207200 Sobic002G207200 Sobic004G111100--Sobic002G207200 Sobic001G072600 Sobic001G072600 Sobic004G111100--Sobic001G072600 Sobic009G034300 Sobic009G034300 Sobic004G111100--Sobic009G034300 Sobic007G047300--Sobic001G360700 Sobic007G047300--Sobic004G047600 Sobic007G047300--Sobic009G162300 Sobic007G047300--Sobic003G352700 Sobic001G471800 Sobic001G471800 Sobic007G047300--Sobic001G471800 Sobic007G047300--Sobic004G111100 Sobic002G146000 Sobic002G146000 Sobic007G047300--Sobic002G146000 Sobic007G047300--Sobic002G207200 Sobic002G203900 Sobic002G203900 Sobic007G047300--Sobic002G203900 Sobic005G145100 Sobic005G145100 Sobic001G208600--Sobic005G145100 Sobic001G208600--Sobic003G099166 Sobic001G208600--Sobic006G075000 Sobic003G239100 Sobic003G239100 Sobic001G208600--Sobic003G239100 Sobic009G017500 Sobic009G017500 Sobic001G208600--Sobic009G017500 Sobic002G053900 Sobic002G053900 Sobic001G208600--Sobic002G053900 Sobic001G334900 Sobic001G334900 Sobic001G208600--Sobic001G334900 Sobic002G030800 Sobic002G030800 Sobic001G208600--Sobic002G030800 Sobic001G208600--Sobic003G352700 Sobic002G075500--Sobic009G063400 Sobic002G075500--Sobic009G125900 Sobic002G118700 Sobic002G118700 Sobic002G075500--Sobic002G118700 Sobic002G075500--Sobic009G026101 Sobic004G051300 Sobic004G051300 Sobic002G075500--Sobic004G051300 Sobic001G099100 Sobic001G099100 Sobic002G075500--Sobic001G099100 Sobic007G180900 Sobic007G180900 Sobic002G075500--Sobic007G180900 Sobic002G075500--Sobic003G254700 Sobic002G075500--Sobic006G156600 Sobic003G254700--Sobic004G111100 Sobic003G254700--Sobic004G007600 Sobic003G254700--Sobic001G133900 Sobic003G254700--Sobic009G026101 Sobic003G254700--Sobic001G072600 Sobic003G254700--Sobic009G246700 Sobic003G254700--Sobic009G125900 Sobic003G254700--Sobic002G075500 Sobic002G218900 Sobic002G218900 Sobic003G254700--Sobic002G218900
Octagon: transcription factors


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