Gene annotation
Transcriptome id Sobic.003G352700.1
Synonym ATLAC17, LAC17, Sb03g039520
Functional annotation similar to Putative laccase (PubMedID : 29862293)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Laccase 17 LAC17 (At) (PubMedID : 27208977)
laccase precursor protein, putative, expressed
UniProt C5XPQ0
Pfam PF07731 PF07732 PF00394
Panther DB PTHR11709 PTHR11709:SF61
NCBI CDD -
KEGG Orthology K05909; laccase
Gene Ontology GO:0016491; oxidoreductase activity GO:0005507copper ion binding


Orthologs (automatic annotation)
TAIR AT5G60020 : laccase 17
RAP-DB (Rice) LOC_Os01g62480.1 : laccase precursor protein, putative, expressed
MaizeGDB (Corn) Zm00025a039673 , Zm00025a026896 , Zm00025a026897 , Zm00025a043896 , Zm00025a026887
Brachypodium KQK22351 , KQK10535 , KQK15781 , KQK10391 , KQK05918 , KQK05916 , KQK10527 , KQK10526 , KQK15785
Barley HORVU1Hr1G072530.2 , HORVU1Hr1G072530.1 , HORVU1Hr1G072530.7 , HORVU1Hr1G072530.4 , HORVU1Hr1G072530.8 , HORVU1Hr1G072530.9 , HORVU6Hr1G013870.3 , HORVU6Hr1G013870.2 , HORVU3Hr1G086200.9 , HORVU3Hr1G086200.8 , HORVU3Hr1G086200.5 , HORVU3Hr1G086200.4 , HORVU3Hr1G086200.7 , HORVU3Hr1G086200.6 , HORVU3Hr1G086200.1 , HORVU3Hr1G086200.3 , HORVU3Hr1G086200.2 , HORVU7Hr1G039310.1 , HORVU4Hr1G059930.4 , HORVU4Hr1G059930.5 , HORVU4Hr1G059930.6 , HORVU4Hr1G059930.7 , HORVU4Hr1G059930.1 , HORVU4Hr1G059930.2 , HORVU4Hr1G059930.3 , HORVU4Hr1G059930.8 , HORVU4Hr1G059930.9 , HORVU7Hr1G039250.8 , HORVU7Hr1G039250.9 , HORVU7Hr1G039250.5 , HORVU1Hr1G072470.3 , HORVU1Hr1G072470.2 , HORVU1Hr1G072470.1 , HORVU1Hr1G072470.7 , HORVU1Hr1G072470.6 , HORVU1Hr1G072470.5 , HORVU1Hr1G072470.4 , HORVU1Hr1G072470.9 , HORVU1Hr1G072470.8 , HORVU4Hr1G059930.12 , HORVU4Hr1G059930.13 , HORVU4Hr1G059930.10 , HORVU4Hr1G059930.11 , HORVU7Hr1G039250.1 , HORVU7Hr1G039250.2 , HORVU7Hr1G039250.3 , HORVU7Hr1G039250.4 , HORVU7Hr1G039250.6 , HORVU7Hr1G039250.7 , HORVU3Hr1G086100.9 , HORVU3Hr1G086100.8 , HORVU3Hr1G086100.2 , HORVU3Hr1G086100.3 , HORVU3Hr1G086100.1 , HORVU3Hr1G086100.6 , HORVU3Hr1G086100.7 , HORVU3Hr1G086100.4 , HORVU3Hr1G086100.5 , HORVU2Hr1G041290.2 , HORVU2Hr1G041290.3 , HORVU2Hr1G041290.1 , HORVU2Hr1G041290.4 , HORVU2Hr1G041290.5 , HORVU7Hr1G096350.2 , HORVU7Hr1G096350.3 , HORVU7Hr1G096350.1 , HORVU7Hr1G096350.6 , HORVU7Hr1G096350.7 , HORVU7Hr1G096350.4 , HORVU7Hr1G096350.5 , HORVU1Hr1G072470.10
Wheat TraesCS1D02G282600 , TraesCS1B02G293100 , TraesCS2A02G206500 , TraesCS4B02G208000 , TraesCS4B02G208000 , TraesCS2D02G209400 , TraesCS5D02G514600 , TraesCS5D02G514600 , TraesCS3B02G393500 , TraesCS4A02G096400 , TraesCS3D02G354200 , TraesCS3B02G392700 , TraesCS3D02G354400 , TraesCS2D02G209800 , TraesCS3A02G360400 , TraesCS3D02G354900 , TraesCS2B02G233500 , TraesCS7A02G191900 , TraesCS2B02G233700 , TraesCS7B02G097100 , TraesCS3A02G361100 , TraesCS1B02G292600 , TraesCS7D02G192900 , TraesCS1D02G283000 , TraesCS3A02G360600 , TraesCS7A02G192100 , TraesCS1A02G283900 , TraesCS7D02G193100 , TraesCS4D02G208900 , TraesCS5B02G514100 , TraesCS3B02G393000 , TraesCS1A02G283400
Populus PNT58152


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cDNA sequences
Sobic.003G352700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G082700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
2 Sobic.004G047600 plant-specific domain TIGR01627 family protein, expressed -
3 Sobic.009G008800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@xylem cysteine proteinase 2 precursor, putative, expressed K16290: xylem cysteine proteinase
4 Sobic.003G239100 lipase class 3 family protein, putative, expressed -
5 Sobic.001G068500 lysine-rich arabinogalactan protein 19 precursor, putative, expressed -
6 Sobic.001G484000 hydrolase, alpha/beta fold family protein, putative, expressed -
7 Sobic.001G059500 LTPL74 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
8 Sobic.005G127200 GDSL-like lipase/acylhydrolase, putative, expressed -
9 Sobic.007G047300 encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed K05279: flavonol 3-O-methyltransferase
10 Sobic.009G162300 similar to Putative laccase-11(PubMedID : 29862293)@Laccase LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
11 Sobic.010G106700 oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
12 Sobic.004G266700 hydrolase, alpha/beta fold family domain containing protein, expressed -
13 Sobic.001G471800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein-related, putative, expressed -
14 Sobic.002G030800 app1, putative, expressed -
15 Sobic.010G093300 GDSL-like lipase/acylhydrolase, putative, expressed -
16 Sobic.001G046800 plastocyanin-like domain containing protein, putative, expressed -
17 Sobic.001G360700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase
18 Sobic.003G341500 lignin modification(PubMedID : 28529519)@laccase precursor protein, putative, expressed K05909: laccase
19 Sobic.006G160900 NAC domain containing protein, putative, expressed -
20 Sobic.005G052500 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)


Gene co-expression network
sample Sobic003G352700 Sobic003G352700 Sobic003G082700 Sobic003G082700 Sobic003G352700--Sobic003G082700 Sobic004G047600 Sobic004G047600 Sobic003G352700--Sobic004G047600 Sobic009G008800 Sobic009G008800 Sobic003G352700--Sobic009G008800 Sobic003G239100 Sobic003G239100 Sobic003G352700--Sobic003G239100 Sobic001G068500 Sobic001G068500 Sobic003G352700--Sobic001G068500 Sobic001G484000 Sobic001G484000 Sobic003G352700--Sobic001G484000 Sobic001G059500 Sobic001G059500 Sobic003G352700--Sobic001G059500 Sobic005G127200 Sobic005G127200 Sobic003G352700--Sobic005G127200 Sobic007G047300 Sobic007G047300 Sobic003G352700--Sobic007G047300 Sobic003G082700--Sobic003G352700 Sobic003G082700--Sobic003G239100 Sobic003G082700--Sobic009G008800 Sobic003G082700--Sobic004G047600 Sobic003G082700--Sobic001G484000 Sobic006G160900 Sobic006G160900 Sobic003G082700--Sobic006G160900 Sobic003G426200 Sobic003G426200 Sobic003G082700--Sobic003G426200 Sobic001G471800 Sobic001G471800 Sobic003G082700--Sobic001G471800 Sobic003G082700--Sobic001G068500 Sobic001G360700 Sobic001G360700 Sobic004G047600--Sobic001G360700 Sobic004G047600--Sobic003G352700 Sobic004G047600--Sobic007G047300 Sobic004G047600--Sobic001G471800 Sobic002G146000 Sobic002G146000 Sobic004G047600--Sobic002G146000 Sobic002G167600 Sobic002G167600 Sobic004G047600--Sobic002G167600 Sobic002G254900 Sobic002G254900 Sobic004G047600--Sobic002G254900 Sobic002G203900 Sobic002G203900 Sobic004G047600--Sobic002G203900 Sobic009G162300 Sobic009G162300 Sobic004G047600--Sobic009G162300 Sobic009G008800--Sobic001G059500 Sobic010G106700 Sobic010G106700 Sobic009G008800--Sobic010G106700 Sobic009G008800--Sobic003G352700 Sobic009G008800--Sobic001G068500 Sobic009G008800--Sobic003G082700 Sobic001G046800 Sobic001G046800 Sobic009G008800--Sobic001G046800 Sobic009G008800--Sobic003G239100 Sobic001G144800 Sobic001G144800 Sobic009G008800--Sobic001G144800 Sobic003G206700 Sobic003G206700 Sobic009G008800--Sobic003G206700 Sobic003G239100--Sobic003G082700 Sobic003G239100--Sobic009G008800 Sobic003G239100--Sobic003G352700 Sobic005G145100 Sobic005G145100 Sobic003G239100--Sobic005G145100 Sobic004G266700 Sobic004G266700 Sobic003G239100--Sobic004G266700 Sobic003G239100--Sobic005G127200 Sobic002G053900 Sobic002G053900 Sobic003G239100--Sobic002G053900 Sobic002G030800 Sobic002G030800 Sobic003G239100--Sobic002G030800 Sobic003G239100--Sobic001G484000 Sobic003G368100 Sobic003G368100 Sobic001G068500--Sobic003G368100 Sobic003G341500 Sobic003G341500 Sobic001G068500--Sobic003G341500 Sobic002G050300 Sobic002G050300 Sobic001G068500--Sobic002G050300 Sobic001G068500--Sobic005G127200 Sobic010G093300 Sobic010G093300 Sobic001G068500--Sobic010G093300 Sobic001G068500--Sobic004G266700 Sobic001G068500--Sobic001G059500 Sobic001G059600 Sobic001G059600 Sobic001G068500--Sobic001G059600 Sobic001G068500--Sobic001G144800 Sobic005G052500 Sobic005G052500 Sobic001G484000--Sobic005G052500 Sobic001G484000--Sobic001G046800 Sobic001G484000--Sobic003G352700 Sobic001G484000--Sobic002G053900 Sobic003G269100 Sobic003G269100 Sobic001G484000--Sobic003G269100 Sobic001G484000--Sobic003G082700 Sobic002G094600 Sobic002G094600 Sobic001G484000--Sobic002G094600 Sobic001G484000--Sobic009G008800 Sobic001G484000--Sobic003G239100 Sobic001G059500--Sobic003G368100 Sobic001G059500--Sobic003G206700 Sobic001G059500--Sobic009G008800 Sobic001G059500--Sobic001G068500 Sobic001G059500--Sobic001G144800 Sobic001G059500--Sobic002G050300 Sobic001G059500--Sobic001G059600 Sobic001G059500--Sobic003G341500 Sobic001G059500--Sobic003G352700 Sobic005G127200--Sobic010G093300 Sobic005G127200--Sobic004G266700 Sobic005G127200--Sobic001G068500 Sobic005G127200--Sobic002G030800 Sobic005G127200--Sobic003G341500 Sobic005G127200--Sobic001G059600 Sobic002G030650 Sobic002G030650 Sobic005G127200--Sobic002G030650 Sobic001G413700 Sobic001G413700 Sobic005G127200--Sobic001G413700 Sobic005G127200--Sobic003G368100 Sobic007G047300--Sobic001G360700 Sobic007G047300--Sobic004G047600 Sobic007G047300--Sobic009G162300 Sobic007G047300--Sobic003G352700 Sobic007G047300--Sobic001G471800 Sobic004G111100 Sobic004G111100 Sobic007G047300--Sobic004G111100 Sobic007G047300--Sobic002G146000 Sobic002G207200 Sobic002G207200 Sobic007G047300--Sobic002G207200 Sobic007G047300--Sobic002G203900
Octagon: transcription factors


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