Gene annotation
| Transcriptome id | Sobic.007G047300.1 |
|---|---|
| Synonym | SbCOMT/Bmr12;Brown midrib12, COMT;caffeic acid/5-hydroxyferulic acid O-methyltransferase, brown midrib12, OMT1, Bmr12;Caffeic acid 3-O-methyltransferase, OMT1, ATOMT1, Sb07g003860, bmr12;brown midrib12, bmr12;Caffeate O-methyltransferase |
| Functional annotation | encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT) (PubMedID : 20585750) SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) methylate the tricin precursors luteolin and selgin (PubMedID : 28594846) monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT) (PubMedID : 12756532) lignin biosynthesis (PubMedID : 12756532) key enzymes in the phenylptropanoid pathway (PubMedID : 28119720) O-methyltransferase, putative, expressed |
| UniProt | C5YH12 , S4SJN4 , Q8W215 , Q84X55 |
| Pfam | PF08100 PF00891 |
| Panther DB | PTHR11746 PTHR11746:SF106 |
| NCBI CDD | KOG3178; Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases |
| KEGG Orthology | K05279; flavonol 3-O-methyltransferase |
| Gene Ontology | GO:0008171; O-methyltransferase activity |
Orthologs (automatic annotation)
| TAIR | AT5G54160 : O-methyltransferase 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os08g06100.1 : O-methyltransferase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a030079 |
| Brachypodium | KQJ95323 , KQK02570 , KQK14236 |
| Barley | HORVU7Hr1G082280.1 , HORVU3Hr1G116770.2 , HORVU3Hr1G116770.1 , HORVU6Hr1G000060.1 , HORVU7Hr1G119480.1 , HORVU7Hr1G119480.2 |
| Wheat | TraesCS2B02G617300 , TraesCS7D02G341500 , TraesCS7D02G538900 , TraesCS3D02G540200 , TraesCS5D02G528600 , TraesCSU02G152500 , TraesCS3A02G534900 , TraesCS7A02G333900 , TraesCS6A02G005600 , TraesCS7D02G539100 , TraesCS6B02G011100 , TraesCS6D02G008200 , TraesCS3B02G612000 , TraesCS5D02G488800 , TraesCS5D02G488800 , TraesCS7B02G245500 |
| Populus | PNS99646 , PNS99645 , PNS99644 , PNS99643 , PNT08781 , PNT08780 |
JBrowse
| Sobic.007G047300 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G360700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | K13083: flavonoid 3',5'-hydroxylase |
| 2 | Sobic.004G047600 | plant-specific domain TIGR01627 family protein, expressed | - |
| 3 | Sobic.009G162300 | similar to Putative laccase-11(PubMedID : 29862293)@Laccase LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed | K05909: laccase |
| 4 | Sobic.003G352700 | similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed | K05909: laccase |
| 5 | Sobic.001G471800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein-related, putative, expressed | - |
| 6 | Sobic.004G111100 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 7 | Sobic.002G146000 | "Localized in cytoplasm, involved in the process of drought defense"(PubMedID : 27231650)@dehydrogenase, putative, expressed | K09753: cinnamoyl-CoA reductase |
| 8 | Sobic.002G207200 | - | - |
| 9 | Sobic.002G203900 | methyladenine glycosylase, putative, expressed | K01246: DNA-3-methyladenine glycosylase I |
| 10 | Sobic.002G207000 | - | - |
| 11 | Sobic.010G101900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed | - |
| 12 | Sobic.003G257400 | "BG3(Ortholog in rice:Xiao et al., 20018)"(PubMedID : 31659870)@purine permease, putative, expressed | - |
| 13 | Sobic.009G236100 | 3-ketoacyl-CoA synthase, putative, expressed | K15397: 3-ketoacyl-CoA synthase |
| 14 | Sobic.004G193500 | expressed protein | - |
| 15 | Sobic.002G254900 | membrane protein, putative, expressed | - |
| 16 | Sobic.001G250100 | thaumatin, putative, expressed | - |
| 17 | Sobic.003G082700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed | - |
| 18 | Sobic.001G002800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein | - |
| 19 | Sobic.001G072600 | expressed protein | - |
| 20 | Sobic.002G167600 | 2-aminoethanethiol dioxygenase, putative, expressed | K10712: cysteamine dioxygenase |
Gene co-expression network
Octagon: transcription factors
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