Gene annotation
Transcriptome id Sobic.003G082700.1
Synonym Sb03g006950, ATXYN1, RXF12
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
glycosyl hydrolase family 10 protein, putative, expressed
UniProt C5XQS8
Pfam PF02018 PF00331
Panther DB PTHR31490 PTHR31490:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016798; hydrolase activity, acting on glycosyl bonds GO:0005975carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT1G58370 : glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
RAP-DB (Rice) LOC_Os01g04300.1 : glycosyl hydrolase family 10 protein, putative, expressed
MaizeGDB (Corn) Zm00025a023576 , Zm00025a023570 , Zm00025a055701 , Zm00025a020394 , Zm00025a017127
Brachypodium KQK02564 , KQK13823 , KQK16182 , KQK16181
Barley HORVU5Hr1G106250.2 , HORVU5Hr1G106250.1 , HORVU5Hr1G106270.1 , HORVU3Hr1G007470.5 , HORVU3Hr1G007470.4 , HORVU3Hr1G007470.6 , HORVU3Hr1G007470.1 , HORVU3Hr1G007470.3 , HORVU3Hr1G007470.2 , HORVU5Hr1G106280.1 , HORVU5Hr1G106210.1 , HORVU5Hr1G106260.1 , HORVU3Hr1G007460.6 , HORVU3Hr1G007460.7 , HORVU3Hr1G007460.4 , HORVU3Hr1G007460.5 , HORVU3Hr1G007460.2 , HORVU3Hr1G007460.3 , HORVU3Hr1G007460.1 , HORVU4Hr1G003220.3 , HORVU4Hr1G003220.2 , HORVU4Hr1G003220.1 , HORVU4Hr1G003220.5 , HORVU4Hr1G003220.4 , HORVU5Hr1G106210.2
Wheat TraesCS5D02G448800 , TraesCS5A02G441400 , TraesCS5A02G441600 , TraesCS2B02G075000 , TraesCS3A02G038200 , TraesCS3B02G045600 , TraesCS2A02G061600 , TraesCS5B02G445700 , TraesCS3D02G041600 , TraesCS4B02G021800 , TraesCS3D02G041600 , TraesCS3D02G041700 , TraesCS5B02G445500 , TraesCS3A02G038000 , TraesCS3A02G038000 , TraesCS3B02G045700 , TraesCS3B02G045700 , TraesCS2D02G060800 , TraesCS5B02G445300 , TraesCS5D02G448600 , TraesCS5A02G441700 , TraesCS5D02G449000
Populus -


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cDNA sequences
Sobic.003G082700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G352700 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
2 Sobic.003G239100 lipase class 3 family protein, putative, expressed -
3 Sobic.009G008800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@xylem cysteine proteinase 2 precursor, putative, expressed K16290: xylem cysteine proteinase
4 Sobic.004G047600 plant-specific domain TIGR01627 family protein, expressed -
5 Sobic.001G484000 hydrolase, alpha/beta fold family protein, putative, expressed -
6 Sobic.006G160900 NAC domain containing protein, putative, expressed -
7 Sobic.003G426200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.001G471800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein-related, putative, expressed -
9 Sobic.001G068500 lysine-rich arabinogalactan protein 19 precursor, putative, expressed -
10 Sobic.005G127200 GDSL-like lipase/acylhydrolase, putative, expressed -
11 Sobic.002G030800 app1, putative, expressed -
12 Sobic.010G106700 oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
13 Sobic.003G255600 expressed protein -
14 Sobic.004G266700 hydrolase, alpha/beta fold family domain containing protein, expressed -
15 Sobic.009G162300 similar to Putative laccase-11(PubMedID : 29862293)@Laccase LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
16 Sobic.007G047300 encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed K05279: flavonol 3-O-methyltransferase
17 Sobic.001G250100 thaumatin, putative, expressed -
18 Sobic.003G023600 peptide-N4-asparagine amidase A, putative, expressed -
19 Sobic.008G055800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.005G112000 P21-Rho-binding domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G082700 Sobic003G082700 Sobic003G352700 Sobic003G352700 Sobic003G082700--Sobic003G352700 Sobic003G239100 Sobic003G239100 Sobic003G082700--Sobic003G239100 Sobic009G008800 Sobic009G008800 Sobic003G082700--Sobic009G008800 Sobic004G047600 Sobic004G047600 Sobic003G082700--Sobic004G047600 Sobic001G484000 Sobic001G484000 Sobic003G082700--Sobic001G484000 Sobic006G160900 Sobic006G160900 Sobic003G082700--Sobic006G160900 Sobic003G426200 Sobic003G426200 Sobic003G082700--Sobic003G426200 Sobic001G471800 Sobic001G471800 Sobic003G082700--Sobic001G471800 Sobic001G068500 Sobic001G068500 Sobic003G082700--Sobic001G068500 Sobic003G352700--Sobic003G082700 Sobic003G352700--Sobic004G047600 Sobic003G352700--Sobic009G008800 Sobic003G352700--Sobic003G239100 Sobic003G352700--Sobic001G068500 Sobic003G352700--Sobic001G484000 Sobic001G059500 Sobic001G059500 Sobic003G352700--Sobic001G059500 Sobic005G127200 Sobic005G127200 Sobic003G352700--Sobic005G127200 Sobic007G047300 Sobic007G047300 Sobic003G352700--Sobic007G047300 Sobic003G239100--Sobic003G082700 Sobic003G239100--Sobic009G008800 Sobic003G239100--Sobic003G352700 Sobic005G145100 Sobic005G145100 Sobic003G239100--Sobic005G145100 Sobic004G266700 Sobic004G266700 Sobic003G239100--Sobic004G266700 Sobic003G239100--Sobic005G127200 Sobic002G053900 Sobic002G053900 Sobic003G239100--Sobic002G053900 Sobic002G030800 Sobic002G030800 Sobic003G239100--Sobic002G030800 Sobic003G239100--Sobic001G484000 Sobic009G008800--Sobic001G059500 Sobic010G106700 Sobic010G106700 Sobic009G008800--Sobic010G106700 Sobic009G008800--Sobic003G352700 Sobic009G008800--Sobic001G068500 Sobic009G008800--Sobic003G082700 Sobic001G046800 Sobic001G046800 Sobic009G008800--Sobic001G046800 Sobic009G008800--Sobic003G239100 Sobic001G144800 Sobic001G144800 Sobic009G008800--Sobic001G144800 Sobic003G206700 Sobic003G206700 Sobic009G008800--Sobic003G206700 Sobic001G360700 Sobic001G360700 Sobic004G047600--Sobic001G360700 Sobic004G047600--Sobic003G352700 Sobic004G047600--Sobic007G047300 Sobic004G047600--Sobic001G471800 Sobic002G146000 Sobic002G146000 Sobic004G047600--Sobic002G146000 Sobic002G167600 Sobic002G167600 Sobic004G047600--Sobic002G167600 Sobic002G254900 Sobic002G254900 Sobic004G047600--Sobic002G254900 Sobic002G203900 Sobic002G203900 Sobic004G047600--Sobic002G203900 Sobic009G162300 Sobic009G162300 Sobic004G047600--Sobic009G162300 Sobic005G052500 Sobic005G052500 Sobic001G484000--Sobic005G052500 Sobic001G484000--Sobic001G046800 Sobic001G484000--Sobic003G352700 Sobic001G484000--Sobic002G053900 Sobic003G269100 Sobic003G269100 Sobic001G484000--Sobic003G269100 Sobic001G484000--Sobic003G082700 Sobic002G094600 Sobic002G094600 Sobic001G484000--Sobic002G094600 Sobic001G484000--Sobic009G008800 Sobic001G484000--Sobic003G239100 Sobic006G160900--Sobic009G008800 Sobic001G250100 Sobic001G250100 Sobic006G160900--Sobic001G250100 Sobic006G160900--Sobic003G082700 Sobic010G155800 Sobic010G155800 Sobic006G160900--Sobic010G155800 Sobic006G160900--Sobic001G484000 Sobic006G160900--Sobic005G127200 Sobic006G160900--Sobic001G471800 Sobic010G093300 Sobic010G093300 Sobic006G160900--Sobic010G093300 Sobic006G160900--Sobic003G352700 Sobic006G205700 Sobic006G205700 Sobic003G426200--Sobic006G205700 Sobic002G391400 Sobic002G391400 Sobic003G426200--Sobic002G391400 Sobic008G022100 Sobic008G022100 Sobic003G426200--Sobic008G022100 Sobic003G167300 Sobic003G167300 Sobic003G426200--Sobic003G167300 Sobic007G206800 Sobic007G206800 Sobic003G426200--Sobic007G206800 Sobic002G115600 Sobic002G115600 Sobic003G426200--Sobic002G115600 Sobic010G241900 Sobic010G241900 Sobic003G426200--Sobic010G241900 Sobic007G220400 Sobic007G220400 Sobic003G426200--Sobic007G220400 Sobic009G259800 Sobic009G259800 Sobic003G426200--Sobic009G259800 Sobic001G471800--Sobic002G146000 Sobic001G471800--Sobic004G047600 Sobic006G224500 Sobic006G224500 Sobic001G471800--Sobic006G224500 Sobic004G193500 Sobic004G193500 Sobic001G471800--Sobic004G193500 Sobic003G183300 Sobic003G183300 Sobic001G471800--Sobic003G183300 Sobic003G255600 Sobic003G255600 Sobic001G471800--Sobic003G255600 Sobic001G471800--Sobic001G360700 Sobic006G031100 Sobic006G031100 Sobic001G471800--Sobic006G031100 Sobic001G471800--Sobic010G093300 Sobic003G368100 Sobic003G368100 Sobic001G068500--Sobic003G368100 Sobic003G341500 Sobic003G341500 Sobic001G068500--Sobic003G341500 Sobic002G050300 Sobic002G050300 Sobic001G068500--Sobic002G050300 Sobic001G068500--Sobic005G127200 Sobic001G068500--Sobic010G093300 Sobic001G068500--Sobic004G266700 Sobic001G068500--Sobic001G059500 Sobic001G059600 Sobic001G059600 Sobic001G068500--Sobic001G059600 Sobic001G068500--Sobic001G144800
Octagon: transcription factors


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