Gene annotation
Transcriptome id Sobic.009G008800.1
Synonym XCP1, Sb09g000960
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
xylem cysteine proteinase 2 precursor, putative, expressed
UniProt A0A1B6P5Q3
Pfam PF08246 PF00112
Panther DB PTHR12411 PTHR12411:SF357
NCBI CDD KOG1543; Cysteine proteinase Cathepsin L
KEGG Orthology K16290; xylem cysteine proteinase
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT4G35350 : xylem cysteine peptidase 1
RAP-DB (Rice) LOC_Os05g01810.1 : xylem cysteine proteinase 2 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a039049 , Zm00025a015320 , Zm00025a016788 , Zm00025a040960
Brachypodium KQJ90836 , PNT72102 , PNT72101
Barley HORVU5Hr1G074780.3 , HORVU5Hr1G074780.2 , HORVU5Hr1G074780.1 , HORVU3Hr1G088080.1 , HORVU3Hr1G088080.2 , HORVU1Hr1G075530.6 , HORVU1Hr1G075530.5 , HORVU1Hr1G075530.3 , HORVU1Hr1G075530.2 , HORVU1Hr1G075530.1 , HORVU1Hr1G003940.7 , HORVU1Hr1G003940.6 , HORVU1Hr1G003940.5 , HORVU1Hr1G003940.4
Wheat TraesCS5B02G138300 , TraesCS5B02G274600 , TraesCS1A02G027300 , TraesCS3D02G342100 , TraesCS5D02G282500 , TraesCS1D02G026500 , TraesCS5A02G138700 , TraesCS1B02G033200 , TraesCS5D02G152400
Populus -


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cDNA sequences
Sobic.009G008800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G059500 LTPL74 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
2 Sobic.010G106700 oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
3 Sobic.003G352700 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
4 Sobic.001G068500 lysine-rich arabinogalactan protein 19 precursor, putative, expressed -
5 Sobic.003G082700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
6 Sobic.001G046800 plastocyanin-like domain containing protein, putative, expressed -
7 Sobic.003G239100 lipase class 3 family protein, putative, expressed -
8 Sobic.001G144800 LTPL72 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.003G206700 heavy metal-associated domain containing protein, expressed -
10 Sobic.003G368100 transferase family protein, putative, expressed K15400: omega-hydroxypalmitate O-feruloyl transferase
11 Sobic.004G266700 hydrolase, alpha/beta fold family domain containing protein, expressed -
12 Sobic.006G160900 NAC domain containing protein, putative, expressed -
13 Sobic.002G053900 Cupin domain containing protein, expressed -
14 Sobic.005G127200 GDSL-like lipase/acylhydrolase, putative, expressed -
15 Sobic.003G341500 lignin modification(PubMedID : 28529519)@laccase precursor protein, putative, expressed K05909: laccase
16 Sobic.001G261460 - -
17 Sobic.001G250100 thaumatin, putative, expressed -
18 Sobic.001G059600 LTPL99 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
19 Sobic.002G094600 "CESA6-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@"cellulose synthase A2, incorporate UDP-sugars into cellulose"(PubMedID : 28944535)@CESA6 - cellulose synthase, expressed K10999: cellulose synthase A
20 Sobic.001G484000 hydrolase, alpha/beta fold family protein, putative, expressed -


Gene co-expression network
sample Sobic009G008800 Sobic009G008800 Sobic001G059500 Sobic001G059500 Sobic009G008800--Sobic001G059500 Sobic010G106700 Sobic010G106700 Sobic009G008800--Sobic010G106700 Sobic003G352700 Sobic003G352700 Sobic009G008800--Sobic003G352700 Sobic001G068500 Sobic001G068500 Sobic009G008800--Sobic001G068500 Sobic003G082700 Sobic003G082700 Sobic009G008800--Sobic003G082700 Sobic001G046800 Sobic001G046800 Sobic009G008800--Sobic001G046800 Sobic003G239100 Sobic003G239100 Sobic009G008800--Sobic003G239100 Sobic001G144800 Sobic001G144800 Sobic009G008800--Sobic001G144800 Sobic003G206700 Sobic003G206700 Sobic009G008800--Sobic003G206700 Sobic003G368100 Sobic003G368100 Sobic001G059500--Sobic003G368100 Sobic001G059500--Sobic003G206700 Sobic001G059500--Sobic009G008800 Sobic001G059500--Sobic001G068500 Sobic001G059500--Sobic001G144800 Sobic002G050300 Sobic002G050300 Sobic001G059500--Sobic002G050300 Sobic001G059600 Sobic001G059600 Sobic001G059500--Sobic001G059600 Sobic003G341500 Sobic003G341500 Sobic001G059500--Sobic003G341500 Sobic001G059500--Sobic003G352700 Sobic010G106700--Sobic001G046800 Sobic010G106700--Sobic009G008800 Sobic002G053900 Sobic002G053900 Sobic010G106700--Sobic002G053900 Sobic010G047600 Sobic010G047600 Sobic010G106700--Sobic010G047600 Sobic010G106700--Sobic001G059500 Sobic010G106700--Sobic003G352700 Sobic001G261460 Sobic001G261460 Sobic010G106700--Sobic001G261460 Sobic010G106700--Sobic001G068500 Sobic010G106700--Sobic003G082700 Sobic003G352700--Sobic003G082700 Sobic004G047600 Sobic004G047600 Sobic003G352700--Sobic004G047600 Sobic003G352700--Sobic009G008800 Sobic003G352700--Sobic003G239100 Sobic003G352700--Sobic001G068500 Sobic001G484000 Sobic001G484000 Sobic003G352700--Sobic001G484000 Sobic003G352700--Sobic001G059500 Sobic005G127200 Sobic005G127200 Sobic003G352700--Sobic005G127200 Sobic007G047300 Sobic007G047300 Sobic003G352700--Sobic007G047300 Sobic001G068500--Sobic003G368100 Sobic001G068500--Sobic003G341500 Sobic001G068500--Sobic002G050300 Sobic001G068500--Sobic005G127200 Sobic010G093300 Sobic010G093300 Sobic001G068500--Sobic010G093300 Sobic004G266700 Sobic004G266700 Sobic001G068500--Sobic004G266700 Sobic001G068500--Sobic001G059500 Sobic001G068500--Sobic001G059600 Sobic001G068500--Sobic001G144800 Sobic003G082700--Sobic003G352700 Sobic003G082700--Sobic003G239100 Sobic003G082700--Sobic009G008800 Sobic003G082700--Sobic004G047600 Sobic003G082700--Sobic001G484000 Sobic006G160900 Sobic006G160900 Sobic003G082700--Sobic006G160900 Sobic003G426200 Sobic003G426200 Sobic003G082700--Sobic003G426200 Sobic001G471800 Sobic001G471800 Sobic003G082700--Sobic001G471800 Sobic003G082700--Sobic001G068500 Sobic001G046800--Sobic010G047600 Sobic001G046800--Sobic001G261460 Sobic001G046800--Sobic010G106700 Sobic001G046800--Sobic002G053900 Sobic001G046800--Sobic009G008800 Sobic001G046800--Sobic001G484000 Sobic010G014400 Sobic010G014400 Sobic001G046800--Sobic010G014400 Sobic003G321400 Sobic003G321400 Sobic001G046800--Sobic003G321400 Sobic003G250700 Sobic003G250700 Sobic001G046800--Sobic003G250700 Sobic003G239100--Sobic003G082700 Sobic003G239100--Sobic009G008800 Sobic003G239100--Sobic003G352700 Sobic005G145100 Sobic005G145100 Sobic003G239100--Sobic005G145100 Sobic003G239100--Sobic004G266700 Sobic003G239100--Sobic005G127200 Sobic003G239100--Sobic002G053900 Sobic002G030800 Sobic002G030800 Sobic003G239100--Sobic002G030800 Sobic003G239100--Sobic001G484000 Sobic001G144800--Sobic003G341500 Sobic001G144800--Sobic004G266700 Sobic001G144800--Sobic003G206700 Sobic001G144800--Sobic001G059500 Sobic001G144800--Sobic001G068500 Sobic001G144800--Sobic003G368100 Sobic001G144800--Sobic009G008800 Sobic001G144800--Sobic001G059600 Sobic001G144800--Sobic005G127200 Sobic003G206700--Sobic001G059500 Sobic003G206700--Sobic001G144800 Sobic003G206700--Sobic009G008800 Sobic003G206700--Sobic003G368100 Sobic003G206700--Sobic001G059600 Sobic003G206700--Sobic001G068500 Sobic002G244300 Sobic002G244300 Sobic003G206700--Sobic002G244300 Sobic003G206700--Sobic003G341500 Sobic003G206700--Sobic001G046800
Octagon: transcription factors


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