Gene annotation
Transcriptome id Sobic.003G352800.1
Synonym LAC17, ATLAC17, Sb03g039530,
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
Protein L-ascorbate oxidase precursor (Os) (PubMedID : 27208977)
laccase precursor protein, putative, expressed
UniProt C5XPQ1
Pfam PF07731 PF07732 PF00394
Panther DB PTHR11709 PTHR11709:SF101
NCBI CDD -
KEGG Orthology K05909; laccase
Gene Ontology GO:0016491; oxidoreductase activity GO:0005507copper ion binding


Orthologs (automatic annotation)
TAIR AT5G60020 : laccase 17
RAP-DB (Rice) LOC_Os01g62490.1 : laccase precursor protein, putative, expressed
MaizeGDB (Corn) Zm00025a039673 , Zm00025a054092 , Zm00025a026896 , Zm00025a026897 , Zm00025a044821 , Zm00025a043896 , Zm00025a026887 , Zm00025a001815
Brachypodium KQK10535 , KQK15781 , KQK05918 , KQK10527 , KQK10526
Barley HORVU1Hr1G072530.2 , HORVU1Hr1G072530.3 , HORVU1Hr1G072530.1 , HORVU1Hr1G072530.6 , HORVU1Hr1G072530.7 , HORVU1Hr1G072530.4 , HORVU1Hr1G072530.5 , HORVU3Hr1G086200.5 , HORVU3Hr1G086200.4 , HORVU1Hr1G072530.8 , HORVU1Hr1G072530.9 , HORVU3Hr1G086200.1 , HORVU3Hr1G086200.3 , HORVU3Hr1G086200.2 , HORVU3Hr1G086100.2 , HORVU3Hr1G086100.8 , HORVU3Hr1G086100.3 , HORVU3Hr1G086200.8 , HORVU3Hr1G086100.9 , HORVU3Hr1G086200.7 , HORVU3Hr1G086200.6 , HORVU7Hr1G096350.1 , HORVU3Hr1G086100.1 , HORVU3Hr1G086100.6 , HORVU3Hr1G086100.7 , HORVU3Hr1G086100.4 , HORVU3Hr1G086100.5 , HORVU7Hr1G039310.1 , HORVU1Hr1G008360.8 , HORVU1Hr1G008360.9 , HORVU1Hr1G008360.2 , HORVU1Hr1G008360.3 , HORVU1Hr1G008360.1 , HORVU1Hr1G008360.6 , HORVU1Hr1G008360.7 , HORVU1Hr1G008360.4 , HORVU1Hr1G008360.5 , HORVU2Hr1G041290.2 , HORVU2Hr1G041290.3 , HORVU2Hr1G041290.1 , HORVU2Hr1G041290.4 , HORVU2Hr1G041290.5 , HORVU7Hr1G039250.8 , HORVU7Hr1G039250.9 , HORVU7Hr1G039250.1 , HORVU7Hr1G039250.2 , HORVU7Hr1G039250.3 , HORVU7Hr1G096350.6 , HORVU7Hr1G096350.7 , HORVU7Hr1G096350.4 , HORVU7Hr1G096350.5 , HORVU1Hr1G072470.3 , HORVU1Hr1G072470.2 , HORVU1Hr1G072470.1 , HORVU1Hr1G072470.7 , HORVU1Hr1G072470.6 , HORVU1Hr1G072470.5 , HORVU1Hr1G072470.4 , HORVU7Hr1G096350.2 , HORVU7Hr1G096350.3 , HORVU1Hr1G072470.9 , HORVU1Hr1G072470.8 , HORVU7Hr1G039250.4 , HORVU7Hr1G039250.5 , HORVU7Hr1G039250.6 , HORVU7Hr1G039250.7 , HORVU1Hr1G072470.10
Wheat TraesCS1D02G044600 , TraesCS1B02G293100 , TraesCS2A02G206500 , TraesCS2D02G209400 , TraesCS5D02G514600 , TraesCS5D02G514600 , TraesCS3D02G354200 , TraesCS3B02G392700 , TraesCS3D02G354400 , TraesCS2D02G209800 , TraesCS3A02G360400 , TraesCS3D02G354900 , TraesCS2B02G233500 , TraesCS7A02G191900 , TraesCS2B02G233700 , TraesCS1B02G056900 , TraesCS7B02G097100 , TraesCS3A02G361100 , TraesCS7D02G192900 , TraesCS1D02G283000 , TraesCS3A02G360600 , TraesCS7A02G192100 , TraesCS1A02G283900 , TraesCS7D02G193100 , TraesCS1D02G044300 , TraesCS5B02G514100 , TraesCS3B02G393000 , TraesCS3B02G393500 , TraesCS1A02G043900
Populus -


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cDNA sequences
Sobic.003G352800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G166800 plastocyanin-like domain containing protein, putative, expressed -
2 Sobic.009G162800 laccase precursor protein, putative, expressed K05909: laccase
3 Sobic.007G027200 anthocyanidin 3-O-glucosyltransferase, putative, expressed -
4 Sobic.002G003200 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.009G241600 Expressed in older stem(PubMedID : 28649278)@zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K18753: butyrate response factor
6 Sobic.008G059800 expressed protein -
7 Sobic.009G153800 protein kinase, putative, expressed K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5
8 Sobic.003G427900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
9 Sobic.010G196400 expressed protein -
10 Sobic.004G344200 HEAT repeat family protein, putative, expressed K16578: CLIP-associating protein 1/2
11 Sobic.010G199700 STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed -
12 Sobic.001G510200 estradiol 17-beta-dehydrogenase 12, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
13 Sobic.003G430000 eukaryotic aspartyl protease domain containing protein, expressed -
14 Sobic.003G236701 - -
15 Sobic.008G112200 Expressed in middle stem(PubMedID : 28649278)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
16 Sobic.006G001000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@cytochrome P450 93A2, putative, expressed -
17 Sobic.001G468300 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
18 Sobic.009G056400 fasciclin domain containing protein, expressed -
19 Sobic.003G153400 GDSL-like lipase/acylhydrolase, putative, expressed -
20 Sobic.002G394700 gibberellin receptor GID1L2, putative, expressed -


Gene co-expression network
sample Sobic003G352800 Sobic003G352800 Sobic006G166800 Sobic006G166800 Sobic003G352800--Sobic006G166800 Sobic009G162800 Sobic009G162800 Sobic003G352800--Sobic009G162800 Sobic007G027200 Sobic007G027200 Sobic003G352800--Sobic007G027200 Sobic002G003200 Sobic002G003200 Sobic003G352800--Sobic002G003200 Sobic009G241600 Sobic009G241600 Sobic003G352800--Sobic009G241600 Sobic008G059800 Sobic008G059800 Sobic003G352800--Sobic008G059800 Sobic009G153800 Sobic009G153800 Sobic003G352800--Sobic009G153800 Sobic003G427900 Sobic003G427900 Sobic003G352800--Sobic003G427900 Sobic010G196400 Sobic010G196400 Sobic003G352800--Sobic010G196400 Sobic006G166800--Sobic007G027200 Sobic006G166800--Sobic009G162800 Sobic001G510200 Sobic001G510200 Sobic006G166800--Sobic001G510200 Sobic006G166800--Sobic003G352800 Sobic003G153400 Sobic003G153400 Sobic006G166800--Sobic003G153400 Sobic002G394700 Sobic002G394700 Sobic006G166800--Sobic002G394700 Sobic006G166800--Sobic010G196400 Sobic007G043800 Sobic007G043800 Sobic006G166800--Sobic007G043800 Sobic006G166800--Sobic009G241600 Sobic009G162800--Sobic006G166800 Sobic009G162800--Sobic003G352800 Sobic009G162800--Sobic010G196400 Sobic009G162800--Sobic007G027200 Sobic009G162800--Sobic001G510200 Sobic009G162800--Sobic003G153400 Sobic009G162800--Sobic002G394700 Sobic003G276200 Sobic003G276200 Sobic009G162800--Sobic003G276200 Sobic009G162800--Sobic009G241600 Sobic007G027200--Sobic006G166800 Sobic007G027200--Sobic001G510200 Sobic007G027200--Sobic009G241600 Sobic007G027200--Sobic002G394700 Sobic007G027200--Sobic003G153400 Sobic010G199700 Sobic010G199700 Sobic007G027200--Sobic010G199700 Sobic007G027200--Sobic003G352800 Sobic007G027200--Sobic009G162800 Sobic007G027200--Sobic007G043800 Sobic002G003200--Sobic003G352800 Sobic002G003200--Sobic009G153800 Sobic004G344200 Sobic004G344200 Sobic002G003200--Sobic004G344200 Sobic001G405000 Sobic001G405000 Sobic002G003200--Sobic001G405000 Sobic002G003200--Sobic008G059800 Sobic006G001000 Sobic006G001000 Sobic002G003200--Sobic006G001000 Sobic009G162500 Sobic009G162500 Sobic002G003200--Sobic009G162500 Sobic001G066900 Sobic001G066900 Sobic002G003200--Sobic001G066900 Sobic008G163000 Sobic008G163000 Sobic002G003200--Sobic008G163000 Sobic003G236701 Sobic003G236701 Sobic009G241600--Sobic003G236701 Sobic009G241600--Sobic007G027200 Sobic006G066500 Sobic006G066500 Sobic009G241600--Sobic006G066500 Sobic009G241600--Sobic008G059800 Sobic002G164600 Sobic002G164600 Sobic009G241600--Sobic002G164600 Sobic009G241600--Sobic010G199700 Sobic008G112200 Sobic008G112200 Sobic009G241600--Sobic008G112200 Sobic003G112200 Sobic003G112200 Sobic009G241600--Sobic003G112200 Sobic009G241600--Sobic006G166800 Sobic008G059800--Sobic002G164600 Sobic008G059800--Sobic003G236701 Sobic008G059800--Sobic009G241600 Sobic008G059800--Sobic009G153800 Sobic008G059800--Sobic010G199700 Sobic007G223600 Sobic007G223600 Sobic008G059800--Sobic007G223600 Sobic008G059800--Sobic008G112200 Sobic009G226900 Sobic009G226900 Sobic008G059800--Sobic009G226900 Sobic008G059800--Sobic006G066500 Sobic009G153800--Sobic008G059800 Sobic009G153800--Sobic002G003200 Sobic009G153800--Sobic004G344200 Sobic009G153800--Sobic010G199700 Sobic009G153800--Sobic003G352800 Sobic009G153800--Sobic008G112200 Sobic009G153800--Sobic002G164600 Sobic009G153800--Sobic009G241600 Sobic009G153800--Sobic003G236701 Sobic003G427900--Sobic003G352800 Sobic010G086800 Sobic010G086800 Sobic003G427900--Sobic010G086800 Sobic003G296400 Sobic003G296400 Sobic003G427900--Sobic003G296400 Sobic003G427900--Sobic006G066500 Sobic003G427900--Sobic009G226900 Sobic001G468300 Sobic001G468300 Sobic003G427900--Sobic001G468300 Sobic006G036400 Sobic006G036400 Sobic003G427900--Sobic006G036400 Sobic003G386200 Sobic003G386200 Sobic003G427900--Sobic003G386200 Sobic003G062000 Sobic003G062000 Sobic003G427900--Sobic003G062000 Sobic010G196400--Sobic009G162800 Sobic010G196400--Sobic001G066900 Sobic001G265900 Sobic001G265900 Sobic010G196400--Sobic001G265900 Sobic010G196400--Sobic006G166800 Sobic001G307300 Sobic001G307300 Sobic010G196400--Sobic001G307300 Sobic010G196400--Sobic003G153400 Sobic001G275600 Sobic001G275600 Sobic010G196400--Sobic001G275600 Sobic009G151000 Sobic009G151000 Sobic010G196400--Sobic009G151000 Sobic001G250200 Sobic001G250200 Sobic010G196400--Sobic001G250200
Octagon: transcription factors


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