Gene annotation
Transcriptome id Sobic.008G112200.1
Synonym Sb08g016620, MYB46, ATMYB46
Functional annotation Expressed in middle stem (PubMedID : 28649278)
myb-like DNA-binding domain containing protein, putative, expressed
UniProt C5YP75 , Q8S441
Pfam PF00249
Panther DB PTHR10641 PTHR10641:SF577
NCBI CDD -
KEGG Orthology K09422; transcription factor MYB, plant
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G12870 : myb domain protein 46
RAP-DB (Rice) LOC_Os12g33070.1 : myb-like DNA-binding domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a048106 , Zm00025a017623 , Zm00025a054415 , Zm00025a037328 , Zm00025a033716 , Zm00025a035541 , Zm00025a027830 , Zm00025a006594 , Zm00025a055299 , Zm00025a004957 , Zm00025a041887 , Zm00025a015471 , Zm00025a040887 , Zm00025a040888 , Zm00025a008353 , Zm00025a049338 , Zm00025a025715 , Zm00025a011116 , Zm00025a023288 , Zm00025a002214 , Zm00025a016687
Brachypodium KQJ91191 , KQJ86560 , PNT65032 , KQK17149 , KQJ82982 , KQK16124 , PNT75046 , KQK02877 , KQK00405 , KQJ84327 , KQK01840 , KQK08236 , KQJ91235
Barley HORVU0Hr1G006810.2 , HORVU0Hr1G006810.1 , HORVU5Hr1G027750.1 , HORVU5Hr1G027750.2 , HORVU1Hr1G089770.1 , HORVU1Hr1G079030.2 , HORVU1Hr1G079030.3 , HORVU1Hr1G079030.1 , HORVU1Hr1G079030.6 , HORVU1Hr1G079030.4 , HORVU1Hr1G079030.5 , HORVU5Hr1G103970.5 , HORVU5Hr1G103970.4 , HORVU5Hr1G103970.1 , HORVU5Hr1G103970.3 , HORVU5Hr1G103970.2 , HORVU3Hr1G066860.7 , HORVU3Hr1G066860.6 , HORVU3Hr1G066860.5 , HORVU3Hr1G066860.4 , HORVU3Hr1G066860.3 , HORVU3Hr1G066860.2 , HORVU3Hr1G066860.1 , HORVU3Hr1G079490.15 , HORVU3Hr1G079490.16 , HORVU3Hr1G079490.10 , HORVU3Hr1G079490.12 , HORVU3Hr1G079490.13 , HORVU3Hr1G079490.6 , HORVU3Hr1G079490.7 , HORVU3Hr1G079490.4 , HORVU3Hr1G079490.2 , HORVU3Hr1G079490.1 , HORVU3Hr1G079490.9 , HORVU2Hr1G091590.1 , HORVU2Hr1G091590.2 , HORVU2Hr1G091590.3 , HORVU2Hr1G091590.4 , HORVU2Hr1G091590.5 , HORVU6Hr1G058630.2 , HORVU6Hr1G058630.3 , HORVU6Hr1G078300.1 , HORVU6Hr1G078300.2 , HORVU6Hr1G078300.3 , HORVU3Hr1G066860.9 , HORVU3Hr1G066860.8 , HORVU2Hr1G091530.2 , HORVU2Hr1G091530.1 , HORVU3Hr1G066860.12 , HORVU3Hr1G066860.11 , HORVU3Hr1G066860.10 , HORVU5Hr1G060650.10 , HORVU6Hr1G058640.1 , HORVU6Hr1G058630.1 , HORVU1Hr1G089770.2 , HORVU3Hr1G016940.1 , HORVU5Hr1G060650.1 , HORVU5Hr1G060650.2 , HORVU5Hr1G060650.3 , HORVU5Hr1G060650.5 , HORVU5Hr1G060650.6 , HORVU5Hr1G060650.7 , HORVU5Hr1G060650.9
Wheat TraesCS1A02G365900 , TraesCS2B02G343800 , TraesCS2D02G445900 , TraesCS3D02G540600 , TraesCS3D02G094500 , TraesCS2D02G444200 , TraesCS2D02G446500 , TraesCS1A02G406600 , TraesCS2B02G467700 , TraesCS6D02G298100 , TraesCS6D02G298100 , TraesCS3B02G109800 , TraesCS1D02G371500 , TraesCS3A02G251200 , TraesCS3A02G251200 , TraesCS3B02G224500 , TraesCS3A02G535100 , TraesCS1D02G371600 , TraesCS2D02G446400 , TraesCS1A02G366000 , TraesCS2A02G447600 , TraesCS1B02G383700 , TraesCS2A02G370300 , TraesCS3B02G280700 , TraesCS1D02G371400 , TraesCS1D02G415000 , TraesCS2A02G447300 , TraesCS6B02G349100 , TraesCS5A02G205200 , TraesCS5B02G105900 , TraesCS3A02G094300 , TraesCS2D02G446300 , TraesCS3A02G336500 , TraesCS2A02G447400 , TraesCS2D02G366800 , TraesCS2B02G387500 , TraesCS5D02G210900 , TraesCS4A02G124900 , TraesCS5D02G113300 , TraesCS3A02G200300 , TraesCS5A02G101000 , TraesCS6A02G318900 , TraesCS1B02G383600 , TraesCS2A02G447200 , TraesCS2D02G366900 , TraesCS2D02G324800 , TraesCS2A02G338200 , TraesCS2A02G445500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G199700 STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed -
2 Sobic.009G241600 Expressed in older stem(PubMedID : 28649278)@zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K18753: butyrate response factor
3 Sobic.008G059800 expressed protein -
4 Sobic.001G066900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsMan06 - Endo-Beta-Mannanase, expressed K19355: mannan endo-1,4-beta-mannosidase
5 Sobic.003G236701 - -
6 Sobic.009G153800 protein kinase, putative, expressed K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5
7 Sobic.001G468300 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
8 Sobic.002G164600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule-associated protein, putative, expressed -
9 Sobic.009G226900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein, putative, expressed -
10 Sobic.007G027200 anthocyanidin 3-O-glucosyltransferase, putative, expressed -
11 Sobic.003G352800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Protein L-ascorbate oxidase precursor (Os)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
12 Sobic.005G087200 plant-specific domain TIGR01627 family protein, expressed K18801: glucuronoxylan 4-O-methyltransferase
13 Sobic.001G362100 nodulation protein-related, putative, expressed -
14 Sobic.006G166800 plastocyanin-like domain containing protein, putative, expressed -
15 Sobic.003G112200 Cupin domain containing protein, expressed -
16 Sobic.009G048000 villin, putative, expressed K08017: advillin
17 Sobic.002G003200 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.010G196400 expressed protein -
19 Sobic.006G226200 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
20 Sobic.004G344200 HEAT repeat family protein, putative, expressed K16578: CLIP-associating protein 1/2


Gene co-expression network
sample Sobic008G112200 Sobic008G112200 Sobic010G199700 Sobic010G199700 Sobic008G112200--Sobic010G199700 Sobic009G241600 Sobic009G241600 Sobic008G112200--Sobic009G241600 Sobic008G059800 Sobic008G059800 Sobic008G112200--Sobic008G059800 Sobic001G066900 Sobic001G066900 Sobic008G112200--Sobic001G066900 Sobic003G236701 Sobic003G236701 Sobic008G112200--Sobic003G236701 Sobic009G153800 Sobic009G153800 Sobic008G112200--Sobic009G153800 Sobic001G468300 Sobic001G468300 Sobic008G112200--Sobic001G468300 Sobic002G164600 Sobic002G164600 Sobic008G112200--Sobic002G164600 Sobic009G226900 Sobic009G226900 Sobic008G112200--Sobic009G226900 Sobic010G199700--Sobic009G241600 Sobic010G199700--Sobic008G112200 Sobic007G027200 Sobic007G027200 Sobic010G199700--Sobic007G027200 Sobic010G199700--Sobic008G059800 Sobic003G153400 Sobic003G153400 Sobic010G199700--Sobic003G153400 Sobic010G199700--Sobic001G468300 Sobic010G199700--Sobic003G236701 Sobic006G166800 Sobic006G166800 Sobic010G199700--Sobic006G166800 Sobic010G199700--Sobic009G153800 Sobic009G241600--Sobic003G236701 Sobic009G241600--Sobic007G027200 Sobic006G066500 Sobic006G066500 Sobic009G241600--Sobic006G066500 Sobic009G241600--Sobic008G059800 Sobic009G241600--Sobic002G164600 Sobic009G241600--Sobic010G199700 Sobic009G241600--Sobic008G112200 Sobic003G112200 Sobic003G112200 Sobic009G241600--Sobic003G112200 Sobic009G241600--Sobic006G166800 Sobic008G059800--Sobic002G164600 Sobic008G059800--Sobic003G236701 Sobic008G059800--Sobic009G241600 Sobic008G059800--Sobic009G153800 Sobic008G059800--Sobic010G199700 Sobic007G223600 Sobic007G223600 Sobic008G059800--Sobic007G223600 Sobic008G059800--Sobic008G112200 Sobic008G059800--Sobic009G226900 Sobic008G059800--Sobic006G066500 Sobic010G196400 Sobic010G196400 Sobic001G066900--Sobic010G196400 Sobic001G265900 Sobic001G265900 Sobic001G066900--Sobic001G265900 Sobic005G146300 Sobic005G146300 Sobic001G066900--Sobic005G146300 Sobic001G066900--Sobic008G112200 Sobic009G031400 Sobic009G031400 Sobic001G066900--Sobic009G031400 Sobic001G250200 Sobic001G250200 Sobic001G066900--Sobic001G250200 Sobic001G066900--Sobic010G199700 Sobic002G003200 Sobic002G003200 Sobic001G066900--Sobic002G003200 Sobic003G352800 Sobic003G352800 Sobic001G066900--Sobic003G352800 Sobic003G236701--Sobic006G066500 Sobic003G236701--Sobic002G164600 Sobic003G236701--Sobic009G241600 Sobic006G226200 Sobic006G226200 Sobic003G236701--Sobic006G226200 Sobic003G236701--Sobic003G112200 Sobic003G236701--Sobic007G223600 Sobic003G236701--Sobic008G059800 Sobic003G231500 Sobic003G231500 Sobic003G236701--Sobic003G231500 Sobic001G238600 Sobic001G238600 Sobic003G236701--Sobic001G238600 Sobic009G153800--Sobic008G059800 Sobic009G153800--Sobic002G003200 Sobic004G344200 Sobic004G344200 Sobic009G153800--Sobic004G344200 Sobic009G153800--Sobic010G199700 Sobic009G153800--Sobic003G352800 Sobic009G153800--Sobic008G112200 Sobic009G153800--Sobic002G164600 Sobic009G153800--Sobic009G241600 Sobic009G153800--Sobic003G236701 Sobic001G468300--Sobic003G236701 Sobic009G048000 Sobic009G048000 Sobic001G468300--Sobic009G048000 Sobic001G468300--Sobic006G066500 Sobic001G468300--Sobic010G199700 Sobic001G468300--Sobic009G241600 Sobic002G332300 Sobic002G332300 Sobic001G468300--Sobic002G332300 Sobic001G468300--Sobic003G112200 Sobic001G468300--Sobic006G226200 Sobic001G468300--Sobic008G059800 Sobic002G164600--Sobic003G236701 Sobic002G164600--Sobic007G223600 Sobic002G164600--Sobic008G059800 Sobic002G164600--Sobic006G226200 Sobic002G164600--Sobic003G112200 Sobic002G164600--Sobic006G066500 Sobic006G209300 Sobic006G209300 Sobic002G164600--Sobic006G209300 Sobic002G164600--Sobic009G241600 Sobic005G229100 Sobic005G229100 Sobic002G164600--Sobic005G229100 Sobic003G062000 Sobic003G062000 Sobic009G226900--Sobic003G062000 Sobic001G224300 Sobic001G224300 Sobic009G226900--Sobic001G224300 Sobic003G296400 Sobic003G296400 Sobic009G226900--Sobic003G296400 Sobic002G205500 Sobic002G205500 Sobic009G226900--Sobic002G205500 Sobic003G387500 Sobic003G387500 Sobic009G226900--Sobic003G387500 Sobic006G036400 Sobic006G036400 Sobic009G226900--Sobic006G036400 Sobic001G406700 Sobic001G406700 Sobic009G226900--Sobic001G406700 Sobic005G087200 Sobic005G087200 Sobic009G226900--Sobic005G087200 Sobic006G075000 Sobic006G075000 Sobic009G226900--Sobic006G075000
Octagon: transcription factors


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