Gene annotation
Transcriptome id Sobic.003G213100.1
Synonym Sb03g027270
Functional annotation AAA-type ATPase family protein, putative, expressed
UniProt A0A1B6Q4K3
Pfam PF05496
Panther DB PTHR23074 PTHR23074:SF100
NCBI CDD KOG0737; AAA+-type ATPase
KEGG Orthology -
Gene Ontology GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT1G64110 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os01g43480.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G225800 AAA-type ATPase family protein, putative, expressed -
2 Sobic.005G197000 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
3 Sobic.002G217000 expressed protein -
4 Sobic.009G051201 - -
5 Sobic.002G069800 OsFBX221 - F-box domain containing protein, expressed -
6 Sobic.005G089101 - K08066: NFYC, nuclear transcription factor Y, gamma
7 Sobic.005G003100 expressed protein -
8 Sobic.009G013200 - -
9 Sobic.002G101200 zinc finger, C3HC4 type domain containing protein, expressed K10638: UHRF1, E3 ubiquitin-protein ligase UHRF1
10 Sobic.006G004100 no apical meristem protein, putative, expressed -
11 Sobic.002G100000 OsFBL33 - F-box domain and LRR containing protein, expressed -
12 Sobic.007G122932 - -
13 Sobic.007G054700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
14 Sobic.003G307600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
15 Sobic.003G291100 - -
16 Sobic.002G058900 OsFBX237 - F-box domain containing protein, expressed -
17 Sobic.005G035500 expressed protein -
18 Sobic.007G037200 expressed protein -
19 Sobic.005G001500 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659895)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
20 Sobic.010G181900 expressed protein -


Gene co-expression network
sample Sobic003G213100 Sobic003G213100 Sobic003G225800 Sobic003G225800 Sobic003G213100--Sobic003G225800 Sobic005G197000 Sobic005G197000 Sobic003G213100--Sobic005G197000 Sobic002G217000 Sobic002G217000 Sobic003G213100--Sobic002G217000 Sobic009G051201 Sobic009G051201 Sobic003G213100--Sobic009G051201 Sobic002G069800 Sobic002G069800 Sobic003G213100--Sobic002G069800 Sobic005G089101 Sobic005G089101 Sobic003G213100--Sobic005G089101 Sobic005G003100 Sobic005G003100 Sobic003G213100--Sobic005G003100 Sobic009G013200 Sobic009G013200 Sobic003G213100--Sobic009G013200 Sobic002G101200 Sobic002G101200 Sobic003G213100--Sobic002G101200 Sobic003G225800--Sobic005G197000 Sobic003G225800--Sobic003G213100 Sobic003G225800--Sobic002G217000 Sobic003G225800--Sobic005G089101 Sobic002G100000 Sobic002G100000 Sobic003G225800--Sobic002G100000 Sobic006G004100 Sobic006G004100 Sobic003G225800--Sobic006G004100 Sobic003G225800--Sobic002G101200 Sobic003G307600 Sobic003G307600 Sobic003G225800--Sobic003G307600 Sobic007G037200 Sobic007G037200 Sobic003G225800--Sobic007G037200 Sobic005G197000--Sobic003G225800 Sobic005G197000--Sobic002G217000 Sobic005G197000--Sobic003G213100 Sobic005G197000--Sobic005G089101 Sobic005G197000--Sobic006G004100 Sobic005G197000--Sobic002G100000 Sobic004G220900 Sobic004G220900 Sobic005G197000--Sobic004G220900 Sobic002G058900 Sobic002G058900 Sobic005G197000--Sobic002G058900 Sobic005G197000--Sobic007G037200 Sobic002G217000--Sobic003G225800 Sobic002G217000--Sobic002G101200 Sobic002G217000--Sobic005G197000 Sobic002G217000--Sobic002G058900 Sobic002G217000--Sobic007G037200 Sobic002G217000--Sobic005G089101 Sobic005G032500 Sobic005G032500 Sobic002G217000--Sobic005G032500 Sobic002G217000--Sobic002G100000 Sobic002G217000--Sobic006G004100 Sobic009G051201--Sobic003G213100 Sobic009G051201--Sobic003G225800 Sobic009G051201--Sobic002G101200 Sobic009G051201--Sobic002G217000 Sobic009G051201--Sobic005G197000 Sobic009G051201--Sobic002G069800 Sobic009G051201--Sobic005G003100 Sobic007G209700 Sobic007G209700 Sobic009G051201--Sobic007G209700 Sobic009G051201--Sobic009G013200 Sobic002G069800--Sobic003G213100 Sobic002G069800--Sobic005G003100 Sobic002G069800--Sobic009G051201 Sobic005G052100 Sobic005G052100 Sobic002G069800--Sobic005G052100 Sobic007G069800 Sobic007G069800 Sobic002G069800--Sobic007G069800 Sobic005G035500 Sobic005G035500 Sobic002G069800--Sobic005G035500 Sobic002G069800--Sobic003G225800 Sobic002G069800--Sobic005G197000 Sobic002G069800--Sobic002G217000 Sobic005G089101--Sobic002G100000 Sobic005G089101--Sobic003G225800 Sobic010G181900 Sobic010G181900 Sobic005G089101--Sobic010G181900 Sobic005G089101--Sobic005G197000 Sobic005G089101--Sobic002G217000 Sobic005G089101--Sobic003G307600 Sobic005G001500 Sobic005G001500 Sobic005G089101--Sobic005G001500 Sobic005G089101--Sobic007G037200 Sobic004G212350 Sobic004G212350 Sobic005G089101--Sobic004G212350 Sobic005G003100--Sobic003G213100 Sobic005G003100--Sobic002G069800 Sobic005G003100--Sobic009G051201 Sobic005G075000 Sobic005G075000 Sobic005G003100--Sobic005G075000 Sobic005G003100--Sobic003G225800 Sobic005G003100--Sobic009G013200 Sobic005G003100--Sobic002G101200 Sobic005G003100--Sobic002G217000 Sobic005G003100--Sobic005G052100 Sobic001G330600 Sobic001G330600 Sobic009G013200--Sobic001G330600 Sobic007G122932 Sobic007G122932 Sobic009G013200--Sobic007G122932 Sobic002G147500 Sobic002G147500 Sobic009G013200--Sobic002G147500 Sobic009G013200--Sobic003G213100 Sobic009G013200--Sobic005G075000 Sobic009G013200--Sobic005G003100 Sobic007G123000 Sobic007G123000 Sobic009G013200--Sobic007G123000 Sobic009G013200--Sobic009G051201 Sobic009G013200--Sobic003G225800 Sobic002G101200--Sobic002G217000 Sobic002G101200--Sobic005G032500 Sobic002G101200--Sobic002G058900 Sobic002G101200--Sobic007G037200 Sobic002G166800 Sobic002G166800 Sobic002G101200--Sobic002G166800 Sobic002G101200--Sobic002G100000 Sobic002G101200--Sobic003G225800 Sobic006G031000 Sobic006G031000 Sobic002G101200--Sobic006G031000 Sobic002G101200--Sobic009G051201
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.