Gene annotation
Transcriptome id Sobic.005G197000.1
Synonym Sb05g025410
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1Z5RJJ1
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF481
NCBI CDD KOG4205; RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1
KEGG Orthology K14411; RNA-binding protein Musashi
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G07810 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os11g41890.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ87603 , KQJ87604
Barley -
Wheat TraesCSU02G068500 , TraesCS4D02G152200 , TraesCS4D02G152200
Populus -


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cDNA sequences
Sobic.005G197000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G225800 AAA-type ATPase family protein, putative, expressed -
2 Sobic.002G217000 expressed protein -
3 Sobic.003G213100 AAA-type ATPase family protein, putative, expressed -
4 Sobic.005G089101 - K08066: NFYC, nuclear transcription factor Y, gamma
5 Sobic.006G004100 no apical meristem protein, putative, expressed -
6 Sobic.002G100000 OsFBL33 - F-box domain and LRR containing protein, expressed -
7 Sobic.004G220900 ethylene-insensitive protein 2, putative, expressed -
8 Sobic.002G058900 OsFBX237 - F-box domain containing protein, expressed -
9 Sobic.007G037200 expressed protein -
10 Sobic.002G101200 zinc finger, C3HC4 type domain containing protein, expressed K10638: UHRF1, E3 ubiquitin-protein ligase UHRF1
11 Sobic.003G307600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
12 Sobic.005G032500 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2
13 Sobic.009G051201 - -
14 Sobic.010G181900 expressed protein -
15 Sobic.003G266100 ESP4, putative, expressed K06100: symplekin
16 Sobic.005G035500 expressed protein -
17 Sobic.008G159300 KUN1 - Kunitz-type trypsin inhibitor precursor, expressed -
18 Sobic.007G054700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
19 Sobic.002G059500 OsFBX237 - F-box domain containing protein, expressed -
20 Sobic.002G166800 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic005G197000 Sobic005G197000 Sobic003G225800 Sobic003G225800 Sobic005G197000--Sobic003G225800 Sobic002G217000 Sobic002G217000 Sobic005G197000--Sobic002G217000 Sobic003G213100 Sobic003G213100 Sobic005G197000--Sobic003G213100 Sobic005G089101 Sobic005G089101 Sobic005G197000--Sobic005G089101 Sobic006G004100 Sobic006G004100 Sobic005G197000--Sobic006G004100 Sobic002G100000 Sobic002G100000 Sobic005G197000--Sobic002G100000 Sobic004G220900 Sobic004G220900 Sobic005G197000--Sobic004G220900 Sobic002G058900 Sobic002G058900 Sobic005G197000--Sobic002G058900 Sobic007G037200 Sobic007G037200 Sobic005G197000--Sobic007G037200 Sobic003G225800--Sobic005G197000 Sobic003G225800--Sobic003G213100 Sobic003G225800--Sobic002G217000 Sobic003G225800--Sobic005G089101 Sobic003G225800--Sobic002G100000 Sobic003G225800--Sobic006G004100 Sobic002G101200 Sobic002G101200 Sobic003G225800--Sobic002G101200 Sobic003G307600 Sobic003G307600 Sobic003G225800--Sobic003G307600 Sobic003G225800--Sobic007G037200 Sobic002G217000--Sobic003G225800 Sobic002G217000--Sobic002G101200 Sobic002G217000--Sobic005G197000 Sobic002G217000--Sobic002G058900 Sobic002G217000--Sobic007G037200 Sobic002G217000--Sobic005G089101 Sobic005G032500 Sobic005G032500 Sobic002G217000--Sobic005G032500 Sobic002G217000--Sobic002G100000 Sobic002G217000--Sobic006G004100 Sobic003G213100--Sobic003G225800 Sobic003G213100--Sobic005G197000 Sobic003G213100--Sobic002G217000 Sobic009G051201 Sobic009G051201 Sobic003G213100--Sobic009G051201 Sobic002G069800 Sobic002G069800 Sobic003G213100--Sobic002G069800 Sobic003G213100--Sobic005G089101 Sobic005G003100 Sobic005G003100 Sobic003G213100--Sobic005G003100 Sobic009G013200 Sobic009G013200 Sobic003G213100--Sobic009G013200 Sobic003G213100--Sobic002G101200 Sobic005G089101--Sobic002G100000 Sobic005G089101--Sobic003G225800 Sobic010G181900 Sobic010G181900 Sobic005G089101--Sobic010G181900 Sobic005G089101--Sobic005G197000 Sobic005G089101--Sobic002G217000 Sobic005G089101--Sobic003G307600 Sobic005G001500 Sobic005G001500 Sobic005G089101--Sobic005G001500 Sobic005G089101--Sobic007G037200 Sobic004G212350 Sobic004G212350 Sobic005G089101--Sobic004G212350 Sobic006G004100--Sobic004G220900 Sobic003G266100 Sobic003G266100 Sobic006G004100--Sobic003G266100 Sobic002G059500 Sobic002G059500 Sobic006G004100--Sobic002G059500 Sobic006G004100--Sobic005G197000 Sobic006G004100--Sobic002G058900 Sobic006G004100--Sobic007G037200 Sobic006G004100--Sobic002G217000 Sobic008G159300 Sobic008G159300 Sobic006G004100--Sobic008G159300 Sobic006G040101 Sobic006G040101 Sobic006G004100--Sobic006G040101 Sobic002G100000--Sobic005G089101 Sobic002G100000--Sobic004G212350 Sobic002G100000--Sobic007G037200 Sobic002G100000--Sobic010G181900 Sobic002G100000--Sobic005G032500 Sobic002G100000--Sobic002G217000 Sobic008G168400 Sobic008G168400 Sobic002G100000--Sobic008G168400 Sobic002G100000--Sobic004G220900 Sobic007G187100 Sobic007G187100 Sobic002G100000--Sobic007G187100 Sobic003G106400 Sobic003G106400 Sobic004G220900--Sobic003G106400 Sobic004G220900--Sobic003G266100 Sobic004G220900--Sobic006G004100 Sobic009G021400 Sobic009G021400 Sobic004G220900--Sobic009G021400 Sobic004G220900--Sobic007G037200 Sobic002G172100 Sobic002G172100 Sobic004G220900--Sobic002G172100 Sobic003G294800 Sobic003G294800 Sobic004G220900--Sobic003G294800 Sobic004G220900--Sobic008G159300 Sobic004G220900--Sobic005G032500 Sobic002G058900--Sobic008G159300 Sobic002G058900--Sobic007G037200 Sobic002G058900--Sobic002G217000 Sobic002G058900--Sobic005G032500 Sobic002G015400 Sobic002G015400 Sobic002G058900--Sobic002G015400 Sobic002G058900--Sobic006G004100 Sobic002G058900--Sobic002G101200 Sobic002G058900--Sobic003G266100 Sobic002G058900--Sobic002G059500 Sobic007G037200--Sobic005G032500 Sobic007G037200--Sobic004G220900 Sobic007G037200--Sobic002G058900 Sobic007G037200--Sobic008G159300 Sobic007G037200--Sobic002G100000 Sobic007G037200--Sobic002G217000 Sobic008G031400 Sobic008G031400 Sobic007G037200--Sobic008G031400 Sobic007G037200--Sobic003G106400 Sobic007G037200--Sobic004G212350
Octagon: transcription factors


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