Gene annotation
Transcriptome id Sobic.002G100600.5,Sobic.002G100600.3,Sobic.002G100600.2,Sobic.002G100600.4,Sobic.002G100600.1
Synonym
Functional annotation ubiquitin family protein, putative, expressed
UniProt A0A1W0VXY4 , A0A1B6QAA8
Pfam -
Panther DB PTHR10666
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G57860 : Ubiquitin-like superfamily protein
RAP-DB (Rice) LOC_Os03g24920.1 : ubiquitin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a048962
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G340566 - -
2 Sobic.001G196800 CAMK_CAMK_like.40 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
3 Sobic.009G132400 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@microtubule associated protein, putative, expressed -
4 Sobic.010G009600 OsFBX182 - F-box domain containing protein, expressed -
5 Sobic.009G156200 starch binding domain containing protein, putative, expressed -
6 Sobic.002G099866 - -
7 Sobic.003G042200 uncharacterized protein At4g06744 precursor, putative, expressed -
8 Sobic.004G262100 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed K00021: hydroxymethylglutaryl-CoA reductase (NADPH)
9 Sobic.001G324800 cysteine proteinase inhibitor 8 precursor, putative, expressed -
10 Sobic.009G234500 similar to Cold acclimation protein COR413-TM1(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cold acclimation protein WCOR413, putative, expressed -
11 Sobic.002G349000 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3
12 Sobic.003G101200 paired amphipathic helix repeat-containing protein, putative, expressed -
13 Sobic.010G180200 transcription factor S-II, central domain containing protein, expressed -
14 Sobic.010G051800 helix-loop-helix DNA-binding domain containing protein, expressed -
15 Sobic.001G509100 expressed protein -
16 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -
17 Sobic.002G274700 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
18 Sobic.001G392700 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
19 Sobic.002G266600 - K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
20 Sobic.003G167200 - -


Gene co-expression network
sample Sobic002G100600 Sobic002G100600 Sobic004G340566 Sobic004G340566 Sobic002G100600--Sobic004G340566 Sobic001G196800 Sobic001G196800 Sobic002G100600--Sobic001G196800 Sobic009G132400 Sobic009G132400 Sobic002G100600--Sobic009G132400 Sobic010G009600 Sobic010G009600 Sobic002G100600--Sobic010G009600 Sobic009G156200 Sobic009G156200 Sobic002G100600--Sobic009G156200 Sobic002G099866 Sobic002G099866 Sobic002G100600--Sobic002G099866 Sobic003G042200 Sobic003G042200 Sobic002G100600--Sobic003G042200 Sobic004G262100 Sobic004G262100 Sobic002G100600--Sobic004G262100 Sobic001G324800 Sobic001G324800 Sobic002G100600--Sobic001G324800 Sobic004G340566--Sobic009G132400 Sobic004G340566--Sobic002G099866 Sobic003G101200 Sobic003G101200 Sobic004G340566--Sobic003G101200 Sobic001G509100 Sobic001G509100 Sobic004G340566--Sobic001G509100 Sobic004G340566--Sobic001G324800 Sobic004G340566--Sobic004G262100 Sobic009G234500 Sobic009G234500 Sobic004G340566--Sobic009G234500 Sobic001G452100 Sobic001G452100 Sobic004G340566--Sobic001G452100 Sobic002G266600 Sobic002G266600 Sobic004G340566--Sobic002G266600 Sobic002G037600 Sobic002G037600 Sobic001G196800--Sobic002G037600 Sobic001G154200 Sobic001G154200 Sobic001G196800--Sobic001G154200 Sobic006G272300 Sobic006G272300 Sobic001G196800--Sobic006G272300 Sobic001G196800--Sobic010G009600 Sobic001G196800--Sobic002G100600 Sobic006G072400 Sobic006G072400 Sobic001G196800--Sobic006G072400 Sobic010G013400 Sobic010G013400 Sobic001G196800--Sobic010G013400 Sobic006G095300 Sobic006G095300 Sobic001G196800--Sobic006G095300 Sobic010G257500 Sobic010G257500 Sobic001G196800--Sobic010G257500 Sobic009G132400--Sobic002G099866 Sobic009G132400--Sobic002G266600 Sobic009G132400--Sobic001G509100 Sobic009G132400--Sobic004G340566 Sobic003G167200 Sobic003G167200 Sobic009G132400--Sobic003G167200 Sobic001G264600 Sobic001G264600 Sobic009G132400--Sobic001G264600 Sobic001G261529 Sobic001G261529 Sobic009G132400--Sobic001G261529 Sobic003G035001 Sobic003G035001 Sobic009G132400--Sobic003G035001 Sobic009G132400--Sobic001G324800 Sobic010G009600--Sobic010G257500 Sobic002G274700 Sobic002G274700 Sobic010G009600--Sobic002G274700 Sobic008G160600 Sobic008G160600 Sobic010G009600--Sobic008G160600 Sobic001G534400 Sobic001G534400 Sobic010G009600--Sobic001G534400 Sobic008G087200 Sobic008G087200 Sobic010G009600--Sobic008G087200 Sobic006G100266 Sobic006G100266 Sobic010G009600--Sobic006G100266 Sobic010G009600--Sobic003G042200 Sobic004G215200 Sobic004G215200 Sobic010G009600--Sobic004G215200 Sobic006G184200 Sobic006G184200 Sobic010G009600--Sobic006G184200 Sobic009G156200--Sobic004G262100 Sobic001G053700 Sobic001G053700 Sobic009G156200--Sobic001G053700 Sobic002G349000 Sobic002G349000 Sobic009G156200--Sobic002G349000 Sobic002G360900 Sobic002G360900 Sobic009G156200--Sobic002G360900 Sobic009G156200--Sobic003G042200 Sobic009G156200--Sobic004G340566 Sobic002G381750 Sobic002G381750 Sobic009G156200--Sobic002G381750 Sobic009G156200--Sobic009G234500 Sobic003G062101 Sobic003G062101 Sobic009G156200--Sobic003G062101 Sobic002G099866--Sobic002G266600 Sobic002G099866--Sobic001G509100 Sobic002G099866--Sobic009G132400 Sobic002G099866--Sobic001G264600 Sobic002G099866--Sobic003G167200 Sobic002G099866--Sobic001G261529 Sobic002G099866--Sobic003G035001 Sobic002G015800 Sobic002G015800 Sobic002G099866--Sobic002G015800 Sobic007G086701 Sobic007G086701 Sobic002G099866--Sobic007G086701 Sobic008G174500 Sobic008G174500 Sobic003G042200--Sobic008G174500 Sobic001G194100 Sobic001G194100 Sobic003G042200--Sobic001G194100 Sobic003G042200--Sobic003G062101 Sobic003G042200--Sobic009G156200 Sobic003G042200--Sobic006G184200 Sobic003G379900 Sobic003G379900 Sobic003G042200--Sobic003G379900 Sobic003G042200--Sobic010G009600 Sobic003G042200--Sobic002G349000 Sobic002G238800 Sobic002G238800 Sobic003G042200--Sobic002G238800 Sobic004G262100--Sobic002G015800 Sobic003G092600 Sobic003G092600 Sobic004G262100--Sobic003G092600 Sobic004G262100--Sobic001G324800 Sobic004G262100--Sobic001G509100 Sobic004G262100--Sobic002G360900 Sobic004G262100--Sobic001G261529 Sobic005G083280 Sobic005G083280 Sobic004G262100--Sobic005G083280 Sobic004G262100--Sobic003G101200 Sobic010G022600 Sobic010G022600 Sobic004G262100--Sobic010G022600 Sobic001G324800--Sobic003G092600 Sobic001G394900 Sobic001G394900 Sobic001G324800--Sobic001G394900 Sobic001G324800--Sobic002G015800 Sobic001G324800--Sobic002G360900 Sobic001G324800--Sobic004G262100 Sobic006G015800 Sobic006G015800 Sobic001G324800--Sobic006G015800 Sobic001G324800--Sobic010G022600 Sobic001G324800--Sobic001G509100 Sobic010G107300 Sobic010G107300 Sobic001G324800--Sobic010G107300
Octagon: transcription factors


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