Hb_128083_010

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig128083: 804-2633
Sequence    

Annotation

kegg
ID rcu:RCOM_0419560
description zinc finger protein, putative
nr
ID XP_002524061.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9SVC5
description Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana GN=DOF3.5 PE=3 SV=1
trembl
ID B9SDJ2
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0419560 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08687: 1106-1262 , PASA_asmbl_08688: 1344-1547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128083_010 0.0 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
2 Hb_006083_010 0.109812507 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
3 Hb_001410_040 0.1114198487 - - Protein ABIL2, putative [Ricinus communis]
4 Hb_009385_010 0.1124398758 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
5 Hb_021142_030 0.113469594 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
6 Hb_003847_090 0.1171204545 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
7 Hb_004788_030 0.1173858968 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
8 Hb_007747_070 0.124332959 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
9 Hb_002133_010 0.1244086466 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
10 Hb_008821_030 0.1244163437 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
11 Hb_000277_030 0.1260472475 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
12 Hb_054165_010 0.1267488955 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
13 Hb_100395_010 0.1286854844 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_046610_010 0.1320934017 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_001002_020 0.1321182805 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000592_070 0.1372850657 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
17 Hb_007894_040 0.1378436598 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
18 Hb_012400_020 0.1397643814 - - Spotted leaf protein, putative [Ricinus communis]
19 Hb_064885_010 0.1411499244 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
20 Hb_019429_020 0.1421827916 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_128083_010 Hb_128083_010 Hb_006083_010 Hb_006083_010 Hb_128083_010--Hb_006083_010 Hb_001410_040 Hb_001410_040 Hb_128083_010--Hb_001410_040 Hb_009385_010 Hb_009385_010 Hb_128083_010--Hb_009385_010 Hb_021142_030 Hb_021142_030 Hb_128083_010--Hb_021142_030 Hb_003847_090 Hb_003847_090 Hb_128083_010--Hb_003847_090 Hb_004788_030 Hb_004788_030 Hb_128083_010--Hb_004788_030 Hb_006083_010--Hb_001410_040 Hb_006083_010--Hb_004788_030 Hb_006083_010--Hb_009385_010 Hb_006083_010--Hb_003847_090 Hb_008821_030 Hb_008821_030 Hb_006083_010--Hb_008821_030 Hb_006083_010--Hb_021142_030 Hb_001410_040--Hb_009385_010 Hb_001410_040--Hb_004788_030 Hb_001410_040--Hb_008821_030 Hb_001410_040--Hb_021142_030 Hb_007747_070 Hb_007747_070 Hb_001410_040--Hb_007747_070 Hb_009385_010--Hb_021142_030 Hb_009385_010--Hb_007747_070 Hb_009385_010--Hb_004788_030 Hb_009385_010--Hb_008821_030 Hb_021142_030--Hb_007747_070 Hb_007894_040 Hb_007894_040 Hb_021142_030--Hb_007894_040 Hb_021142_030--Hb_004788_030 Hb_021142_030--Hb_008821_030 Hb_000277_030 Hb_000277_030 Hb_003847_090--Hb_000277_030 Hb_003847_090--Hb_004788_030 Hb_003847_090--Hb_001410_040 Hb_003847_090--Hb_009385_010 Hb_001002_020 Hb_001002_020 Hb_003847_090--Hb_001002_020 Hb_004788_030--Hb_008821_030 Hb_019429_020 Hb_019429_020 Hb_004788_030--Hb_019429_020 Hb_004788_030--Hb_007747_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0345593 3.93621 7.88815 3.64095 0.0552948 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.189863 0.049766 0 0.0201107 0

CAGE analysis