Hb_121338_010

Information

Type -
Description -
Location Contig121338: 985-1511
Sequence    

Annotation

kegg
ID brp:103848430
description DNA-binding protein HEXBP-like
nr
ID XP_012075950.1
description PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID M1DSU3
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400043417 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121338_010 0.0 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
2 Hb_008879_010 0.2324130927 - - Beta-ureidopropionase, putative [Ricinus communis]
3 Hb_002325_080 0.256956244 - - -
4 Hb_041813_020 0.2637176935 - - ATP synthase epsilon subunit [Grubbia rosmarinifolia]
5 Hb_001595_060 0.2649967268 - - hypothetical protein L484_001429 [Morus notabilis]
6 Hb_006267_050 0.2652389101 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
7 Hb_011206_030 0.2678301538 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
8 Hb_048953_010 0.2678301538 - - PREDICTED: uncharacterized protein LOC105775428 [Gossypium raimondii]
9 Hb_004772_010 0.270843186 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
10 Hb_003504_050 0.2750343483 - - hypothetical protein JCGZ_23540 [Jatropha curcas]
11 Hb_024446_010 0.2814391553 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
12 Hb_064445_030 0.2819045706 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
13 Hb_003828_010 0.2820124413 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
14 Hb_177166_010 0.2825110506 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
15 Hb_006094_010 0.2833543633 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
16 Hb_005781_010 0.283788316 - - PREDICTED: probable terpene synthase 6 [Jatropha curcas]
17 Hb_000485_060 0.2847213124 - - PREDICTED: uncharacterized protein LOC105641351 [Jatropha curcas]
18 Hb_002478_050 0.2852307361 - - K(+)/H(+) antiporter, putative [Ricinus communis]
19 Hb_001844_010 0.286098257 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
20 Hb_076836_010 0.2863231276 - - PREDICTED: uncharacterized protein LOC104801925 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_121338_010 Hb_121338_010 Hb_008879_010 Hb_008879_010 Hb_121338_010--Hb_008879_010 Hb_002325_080 Hb_002325_080 Hb_121338_010--Hb_002325_080 Hb_041813_020 Hb_041813_020 Hb_121338_010--Hb_041813_020 Hb_001595_060 Hb_001595_060 Hb_121338_010--Hb_001595_060 Hb_006267_050 Hb_006267_050 Hb_121338_010--Hb_006267_050 Hb_011206_030 Hb_011206_030 Hb_121338_010--Hb_011206_030 Hb_008879_010--Hb_002325_080 Hb_008879_010--Hb_041813_020 Hb_008879_010--Hb_001595_060 Hb_008879_010--Hb_006267_050 Hb_008879_010--Hb_011206_030 Hb_048953_010 Hb_048953_010 Hb_008879_010--Hb_048953_010 Hb_002325_080--Hb_041813_020 Hb_002325_080--Hb_001595_060 Hb_002325_080--Hb_006267_050 Hb_002325_080--Hb_011206_030 Hb_002325_080--Hb_048953_010 Hb_004772_010 Hb_004772_010 Hb_002325_080--Hb_004772_010 Hb_041813_020--Hb_001595_060 Hb_041813_020--Hb_006267_050 Hb_041813_020--Hb_011206_030 Hb_041813_020--Hb_048953_010 Hb_041813_020--Hb_004772_010 Hb_001595_060--Hb_006267_050 Hb_001595_060--Hb_011206_030 Hb_001595_060--Hb_048953_010 Hb_001595_060--Hb_004772_010 Hb_006267_050--Hb_011206_030 Hb_006267_050--Hb_048953_010 Hb_006267_050--Hb_004772_010 Hb_011206_030--Hb_048953_010 Hb_011206_030--Hb_004772_010 Hb_003504_050 Hb_003504_050 Hb_011206_030--Hb_003504_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0503796 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.250325 0 0 0 0.185543

CAGE analysis