Hb_092010_010

Information

Type -
Description -
Location Contig92010: 944-1678
Sequence    

Annotation

kegg
ID csv:101211803
description cysteine proteinase inhibitor 5-like
nr
ID NP_001267677.1
description cysteine proteinase inhibitor 5-like [Cucumis sativus]
swissprot
ID P31726
description Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1
trembl
ID O80389
description Cystein proteinase inhibitor OS=Cucumis sativus PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092010_010 0.0 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
2 Hb_001454_420 0.0853758514 - - multidrug resistance pump, putative [Ricinus communis]
3 Hb_005653_050 0.08816772 - - PREDICTED: CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase [Jatropha curcas]
4 Hb_004225_010 0.0896355678 - - -
5 Hb_001373_170 0.0908204941 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
6 Hb_181908_010 0.09092321 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
7 Hb_008008_040 0.0957228375 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
8 Hb_000086_460 0.10974606 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
9 Hb_001308_010 0.1101370587 - - conserved hypothetical protein [Ricinus communis]
10 Hb_093084_030 0.1103460697 - - oleosin2 [Plukenetia volubilis]
11 Hb_003858_010 0.1105855213 - - xyloglucan endotransglucosylase/hydrolase [Gossypium hirsutum]
12 Hb_005614_060 0.1111216291 - - Uncharacterized protein TCM_019750 [Theobroma cacao]
13 Hb_057862_010 0.1114237391 - - protein binding protein, putative [Ricinus communis]
14 Hb_177208_010 0.1118865126 transcription factor TF Family: MIKC MADS-box transcription factor, partial [Jatropha sp. CONN 198700232]
15 Hb_004440_030 0.1121208884 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
16 Hb_185608_010 0.1163550227 - - hypothetical protein POPTR_0004s22210g [Populus trichocarpa]
17 Hb_000227_290 0.1163995087 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
18 Hb_000005_020 0.1191979444 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
19 Hb_000445_410 0.1215704784 - - hypothetical protein EUGRSUZ_F02776 [Eucalyptus grandis]
20 Hb_004218_270 0.1217300969 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_092010_010 Hb_092010_010 Hb_001454_420 Hb_001454_420 Hb_092010_010--Hb_001454_420 Hb_005653_050 Hb_005653_050 Hb_092010_010--Hb_005653_050 Hb_004225_010 Hb_004225_010 Hb_092010_010--Hb_004225_010 Hb_001373_170 Hb_001373_170 Hb_092010_010--Hb_001373_170 Hb_181908_010 Hb_181908_010 Hb_092010_010--Hb_181908_010 Hb_008008_040 Hb_008008_040 Hb_092010_010--Hb_008008_040 Hb_001454_420--Hb_181908_010 Hb_001454_420--Hb_008008_040 Hb_001454_420--Hb_001373_170 Hb_001454_420--Hb_005653_050 Hb_001454_420--Hb_004225_010 Hb_003858_010 Hb_003858_010 Hb_001454_420--Hb_003858_010 Hb_005653_050--Hb_004225_010 Hb_005653_050--Hb_001373_170 Hb_001308_010 Hb_001308_010 Hb_005653_050--Hb_001308_010 Hb_005653_050--Hb_181908_010 Hb_005653_050--Hb_008008_040 Hb_004225_010--Hb_001308_010 Hb_004225_010--Hb_001373_170 Hb_029584_030 Hb_029584_030 Hb_004225_010--Hb_029584_030 Hb_004225_010--Hb_181908_010 Hb_001373_170--Hb_008008_040 Hb_001373_170--Hb_181908_010 Hb_000445_410 Hb_000445_410 Hb_001373_170--Hb_000445_410 Hb_181908_010--Hb_008008_040 Hb_181908_010--Hb_003858_010 Hb_181908_010--Hb_000445_410 Hb_008008_040--Hb_000445_410 Hb_003793_010 Hb_003793_010 Hb_008008_040--Hb_003793_010 Hb_008008_040--Hb_003858_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 4.95795 29.3045 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.112444 0.377854 0.0938482 8.75018

CAGE analysis