Hb_003973_050

Information

Type -
Description -
Location Contig3973: 45488-47664
Sequence    

Annotation

kegg
ID rcu:RCOM_1585600
description acc synthase, putative (EC:4.4.1.14)
nr
ID XP_011017063.1
description PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3-like isoform X1 [Populus euphratica]
swissprot
ID Q42881
description 1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=1 SV=1
trembl
ID B9R6U5
description Acc synthase, putative OS=Ricinus communis GN=RCOM_1585600 PE=3 SV=1
Gene Ontology
ID GO:0016847
description 1-aminocyclopropane-1-carboxylate synthase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003973_050 0.0 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3-like isoform X1 [Populus euphratica]
2 Hb_005687_020 0.0990344022 - - P66 protein [Hevea brasiliensis]
3 Hb_011980_020 0.1034049392 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_163950_060 0.1062694953 - - multidrug resistance pump, putative [Ricinus communis]
5 Hb_000395_160 0.1110506159 - - hypothetical protein POPTR_0006s25490g [Populus trichocarpa]
6 Hb_186671_020 0.1111446303 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_027556_080 0.1129046036 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Jatropha curcas]
8 Hb_001796_010 0.11668811 - - purine transporter, putative [Ricinus communis]
9 Hb_000261_540 0.1171672595 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Jatropha curcas]
10 Hb_005529_050 0.1196762247 - - PREDICTED: cytochrome P450 94B3-like [Nelumbo nucifera]
11 Hb_000979_270 0.1198542914 - - PREDICTED: MLP-like protein 31 [Jatropha curcas]
12 Hb_000004_150 0.1206440719 - - hypothetical protein RCOM_1382630 [Ricinus communis]
13 Hb_000007_170 0.1206440719 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Nelumbo nucifera]
14 Hb_000010_280 0.1206440719 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
15 Hb_000022_220 0.1206440719 - - PREDICTED: potassium channel KAT3 [Jatropha curcas]
16 Hb_000045_120 0.1206440719 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
17 Hb_000056_320 0.1206440719 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
18 Hb_000066_110 0.1206440719 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01370 [Jatropha curcas]
19 Hb_000072_270 0.1206440719 - - JHL22C18.10 [Jatropha curcas]
20 Hb_000078_110 0.1206440719 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]

Gene co-expression network

sample Hb_003973_050 Hb_003973_050 Hb_005687_020 Hb_005687_020 Hb_003973_050--Hb_005687_020 Hb_011980_020 Hb_011980_020 Hb_003973_050--Hb_011980_020 Hb_163950_060 Hb_163950_060 Hb_003973_050--Hb_163950_060 Hb_000395_160 Hb_000395_160 Hb_003973_050--Hb_000395_160 Hb_186671_020 Hb_186671_020 Hb_003973_050--Hb_186671_020 Hb_027556_080 Hb_027556_080 Hb_003973_050--Hb_027556_080 Hb_005687_020--Hb_000395_160 Hb_005687_020--Hb_163950_060 Hb_005687_020--Hb_011980_020 Hb_004096_040 Hb_004096_040 Hb_005687_020--Hb_004096_040 Hb_005687_020--Hb_186671_020 Hb_001796_010 Hb_001796_010 Hb_005687_020--Hb_001796_010 Hb_011980_020--Hb_163950_060 Hb_007943_040 Hb_007943_040 Hb_011980_020--Hb_007943_040 Hb_000336_170 Hb_000336_170 Hb_011980_020--Hb_000336_170 Hb_011980_020--Hb_001796_010 Hb_008978_010 Hb_008978_010 Hb_011980_020--Hb_008978_010 Hb_163950_060--Hb_000336_170 Hb_163950_060--Hb_007943_040 Hb_163950_060--Hb_008978_010 Hb_163950_060--Hb_186671_020 Hb_000979_270 Hb_000979_270 Hb_000395_160--Hb_000979_270 Hb_000004_150 Hb_000004_150 Hb_000395_160--Hb_000004_150 Hb_000007_170 Hb_000007_170 Hb_000395_160--Hb_000007_170 Hb_000010_280 Hb_000010_280 Hb_000395_160--Hb_000010_280 Hb_000022_220 Hb_000022_220 Hb_000395_160--Hb_000022_220 Hb_186671_020--Hb_001796_010 Hb_018609_010 Hb_018609_010 Hb_186671_020--Hb_018609_010 Hb_005050_010 Hb_005050_010 Hb_186671_020--Hb_005050_010 Hb_186671_020--Hb_000395_160 Hb_186671_020--Hb_000979_270 Hb_005529_050 Hb_005529_050 Hb_027556_080--Hb_005529_050 Hb_027556_080--Hb_163950_060 Hb_027556_080--Hb_011980_020 Hb_001985_010 Hb_001985_010 Hb_027556_080--Hb_001985_010 Hb_027556_080--Hb_000336_170 Hb_027556_080--Hb_007943_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0178664 0.960054 0 0.0106095 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis