Hb_001006_200

Information

Type transcription factor
Description TF Family: G2-like
Location Contig1006: 252549-256631
Sequence    

Annotation

kegg
ID rcu:RCOM_0775800
description hypothetical protein
nr
ID XP_002521884.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q700D9
description Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2
trembl
ID B9S7B5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0775800 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor at1g14600

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_200 0.0 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
2 Hb_003086_180 0.1146262494 - - PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
3 Hb_001652_050 0.1148744614 - - -
4 Hb_023774_010 0.1182868611 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
5 Hb_000613_270 0.1203389407 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
6 Hb_089843_010 0.1341916976 - - hypothetical protein JCGZ_05278 [Jatropha curcas]
7 Hb_047923_010 0.1351460028 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
8 Hb_001609_080 0.1365800538 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
9 Hb_002553_100 0.1462802705 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
10 Hb_000462_020 0.1464028682 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_006919_010 0.1486383561 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
12 Hb_004079_110 0.1507991011 - - PREDICTED: uncharacterized protein LOC100257802 [Vitis vinifera]
13 Hb_174514_010 0.1527552556 - - flavin-containing monooxygenase family protein [Populus trichocarpa]
14 Hb_002157_180 0.1560172121 - - separase, putative [Ricinus communis]
15 Hb_005653_100 0.1574431381 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
16 Hb_000220_170 0.1653340964 - - -
17 Hb_001621_020 0.1679298427 - - -
18 Hb_002374_110 0.1716510964 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
19 Hb_099198_010 0.1718535984 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 isoform X2 [Nicotiana tomentosiformis]
20 Hb_002171_070 0.171960032 desease resistance Gene Name: NB-ARC NBS-LRR resistance gene-like protein ARGH30 [Populus trichocarpa]

Gene co-expression network

sample Hb_001006_200 Hb_001006_200 Hb_003086_180 Hb_003086_180 Hb_001006_200--Hb_003086_180 Hb_001652_050 Hb_001652_050 Hb_001006_200--Hb_001652_050 Hb_023774_010 Hb_023774_010 Hb_001006_200--Hb_023774_010 Hb_000613_270 Hb_000613_270 Hb_001006_200--Hb_000613_270 Hb_089843_010 Hb_089843_010 Hb_001006_200--Hb_089843_010 Hb_047923_010 Hb_047923_010 Hb_001006_200--Hb_047923_010 Hb_003086_180--Hb_023774_010 Hb_003086_180--Hb_000613_270 Hb_003086_180--Hb_089843_010 Hb_003086_180--Hb_001652_050 Hb_003086_180--Hb_047923_010 Hb_174514_010 Hb_174514_010 Hb_003086_180--Hb_174514_010 Hb_001652_050--Hb_023774_010 Hb_001652_050--Hb_000613_270 Hb_001652_050--Hb_047923_010 Hb_002157_180 Hb_002157_180 Hb_001652_050--Hb_002157_180 Hb_008111_020 Hb_008111_020 Hb_001652_050--Hb_008111_020 Hb_023774_010--Hb_000613_270 Hb_023774_010--Hb_047923_010 Hb_023774_010--Hb_089843_010 Hb_023774_010--Hb_002157_180 Hb_000613_270--Hb_047923_010 Hb_000613_270--Hb_089843_010 Hb_000613_270--Hb_002157_180 Hb_089843_010--Hb_174514_010 Hb_089843_010--Hb_047923_010 Hb_089843_010--Hb_001652_050 Hb_047923_010--Hb_008111_020 Hb_047923_010--Hb_002157_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.73682 3.41614 0.258957 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.42414 0.105369

CAGE analysis