Hb_000982_030

Information

Type -
Description -
Location Contig982: 109396-110359
Sequence    

Annotation

kegg
ID rcu:RCOM_1611860
description hypothetical protein
nr
ID XP_002511710.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RDC1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1611860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000982_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000866_160 0.3116081095 - - PREDICTED: elicitor-responsive protein 3 [Populus euphratica]
3 Hb_031089_060 0.3116282533 - - -
4 Hb_000487_390 0.3350108069 - - PREDICTED: putative pumilio homolog 21 [Jatropha curcas]
5 Hb_001263_020 0.3367221419 - - -
6 Hb_012656_010 0.3371560532 - - -
7 Hb_003812_010 0.3407658395 - - -
8 Hb_001754_220 0.3638029062 - - -
9 Hb_019654_160 0.3987914913 - - Zinc finger protein GIS2 [Medicago truncatula]
10 Hb_012799_090 0.3996325588 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
11 Hb_001798_040 0.4225043 transcription factor TF Family: NAC hypothetical protein ARALYDRAFT_918808 [Arabidopsis lyrata subsp. lyrata]
12 Hb_000326_020 0.4427596982 - - -
13 Hb_009181_020 0.4433292233 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_007189_020 0.4434390099 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
15 Hb_000917_250 0.4467662913 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
16 Hb_156635_050 0.4581652015 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
17 Hb_007524_050 0.4611777188 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
18 Hb_002383_060 0.4620432588 - - PREDICTED: uncharacterized protein LOC102596491 [Solanum tuberosum]
19 Hb_000922_090 0.4622962269 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Populus euphratica]
20 Hb_000861_090 0.465656962 - - -

Gene co-expression network

sample Hb_000982_030 Hb_000982_030 Hb_000866_160 Hb_000866_160 Hb_000982_030--Hb_000866_160 Hb_031089_060 Hb_031089_060 Hb_000982_030--Hb_031089_060 Hb_000487_390 Hb_000487_390 Hb_000982_030--Hb_000487_390 Hb_001263_020 Hb_001263_020 Hb_000982_030--Hb_001263_020 Hb_012656_010 Hb_012656_010 Hb_000982_030--Hb_012656_010 Hb_003812_010 Hb_003812_010 Hb_000982_030--Hb_003812_010 Hb_000866_160--Hb_031089_060 Hb_000866_160--Hb_000487_390 Hb_000866_160--Hb_001263_020 Hb_000866_160--Hb_012656_010 Hb_000866_160--Hb_003812_010 Hb_001754_220 Hb_001754_220 Hb_000866_160--Hb_001754_220 Hb_031089_060--Hb_000487_390 Hb_031089_060--Hb_001263_020 Hb_031089_060--Hb_012656_010 Hb_031089_060--Hb_003812_010 Hb_031089_060--Hb_001754_220 Hb_000487_390--Hb_001263_020 Hb_000487_390--Hb_012656_010 Hb_000487_390--Hb_003812_010 Hb_000487_390--Hb_001754_220 Hb_019654_160 Hb_019654_160 Hb_000487_390--Hb_019654_160 Hb_001263_020--Hb_012656_010 Hb_001263_020--Hb_003812_010 Hb_001263_020--Hb_001754_220 Hb_001263_020--Hb_019654_160 Hb_012799_090 Hb_012799_090 Hb_001263_020--Hb_012799_090 Hb_012656_010--Hb_003812_010 Hb_012656_010--Hb_001754_220 Hb_012656_010--Hb_019654_160 Hb_012656_010--Hb_012799_090 Hb_003812_010--Hb_001754_220 Hb_003812_010--Hb_019654_160 Hb_003812_010--Hb_012799_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0207977 0.0479055 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0461117 0 0 0

CAGE analysis