Gene annotation
Transcriptome id Sobic.009G056100.2,Sobic.009G056100.3,Sobic.009G056100.1
Synonym RSZ33, ATRSZ33
Functional annotation splicing factor, arginine/serine-rich, putative, expressed
UniProt A0A1B6P6X1 , A0A1B6P717 , A0A1B6P6Y1
Pfam PF00098 PF00076
Panther DB PTHR24012
NCBI CDD KOG0106; Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G37340 : arginine/serine-rich zinc knuckle-containing protein 33
RAP-DB (Rice) LOC_Os01g06290.1 : splicing factor, arginine/serine-rich, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G126000 - -
2 Sobic.010G207900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@prenyltransferase, putative, expressed K09833: HPT, HGGT, homogentisate phytyltransferase / homogentisate geranylgeranyltransferase
3 Sobic.002G358000 transmembrane receptor, putative, expressed -
4 Sobic.002G286800 MATE efflux protein, putative, expressed -
5 Sobic.003G099900 expressed protein -
6 Sobic.007G131100 jmjC domain containing protein, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
7 Sobic.008G082300 DEF3 - Defensin and Defensin-like DEFL family, expressed -
8 Sobic.008G188200 - -
9 Sobic.008G064100 flavin monooxygenase, putative, expressed K11816: indole-3-pyruvate monooxygenase
10 Sobic.008G184000 aspartic proteinase, putative, expressed -
11 Sobic.003G415300 DEF1 - Defensin and Defensin-like DEFL family, expressed -
12 Sobic.007G025100 expressed protein -
13 Sobic.008G069200 OsMADS13 - MADS-box family gene with MIKCc type-box, expressed -
14 Sobic.007G199500 MBTB30 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
15 Sobic.005G178200 hypothetical protein -
16 Sobic.001G029700 ELM2 domain containing protein, putative, expressed -
17 Sobic.010G035000 - -
18 Sobic.003G326300 LTPL29 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
19 Sobic.009G202200 expressed protein -
20 Sobic.009G007100 glutelin, putative, expressed -


Gene co-expression network
sample Sobic009G056100 Sobic009G056100 Sobic007G126000 Sobic007G126000 Sobic009G056100--Sobic007G126000 Sobic010G207900 Sobic010G207900 Sobic009G056100--Sobic010G207900 Sobic002G358000 Sobic002G358000 Sobic009G056100--Sobic002G358000 Sobic002G286800 Sobic002G286800 Sobic009G056100--Sobic002G286800 Sobic003G099900 Sobic003G099900 Sobic009G056100--Sobic003G099900 Sobic007G131100 Sobic007G131100 Sobic009G056100--Sobic007G131100 Sobic008G082300 Sobic008G082300 Sobic009G056100--Sobic008G082300 Sobic008G188200 Sobic008G188200 Sobic009G056100--Sobic008G188200 Sobic008G064100 Sobic008G064100 Sobic009G056100--Sobic008G064100 Sobic007G126000--Sobic010G207900 Sobic006G018751 Sobic006G018751 Sobic007G126000--Sobic006G018751 Sobic004G322901 Sobic004G322901 Sobic007G126000--Sobic004G322901 Sobic007G126000--Sobic009G056100 Sobic005G083280 Sobic005G083280 Sobic007G126000--Sobic005G083280 Sobic007G126000--Sobic002G286800 Sobic007G086701 Sobic007G086701 Sobic007G126000--Sobic007G086701 Sobic009G202200 Sobic009G202200 Sobic007G126000--Sobic009G202200 Sobic001G371600 Sobic001G371600 Sobic007G126000--Sobic001G371600 Sobic010G207900--Sobic006G018751 Sobic010G207900--Sobic007G086701 Sobic010G207900--Sobic007G126000 Sobic001G264600 Sobic001G264600 Sobic010G207900--Sobic001G264600 Sobic010G207900--Sobic004G322901 Sobic002G174500 Sobic002G174500 Sobic010G207900--Sobic002G174500 Sobic010G207900--Sobic009G056100 Sobic010G207900--Sobic005G083280 Sobic001G261529 Sobic001G261529 Sobic010G207900--Sobic001G261529 Sobic002G358000--Sobic008G082300 Sobic009G007100 Sobic009G007100 Sobic002G358000--Sobic009G007100 Sobic002G358000--Sobic007G131100 Sobic010G035000 Sobic010G035000 Sobic002G358000--Sobic010G035000 Sobic005G184400 Sobic005G184400 Sobic002G358000--Sobic005G184400 Sobic005G186250 Sobic005G186250 Sobic002G358000--Sobic005G186250 Sobic005G184600 Sobic005G184600 Sobic002G358000--Sobic005G184600 Sobic006G142850 Sobic006G142850 Sobic002G358000--Sobic006G142850 Sobic007G049000 Sobic007G049000 Sobic002G358000--Sobic007G049000 Sobic002G286800--Sobic010G035000 Sobic007G199500 Sobic007G199500 Sobic002G286800--Sobic007G199500 Sobic001G297700 Sobic001G297700 Sobic002G286800--Sobic001G297700 Sobic002G286800--Sobic007G131100 Sobic006G105300 Sobic006G105300 Sobic002G286800--Sobic006G105300 Sobic005G184500 Sobic005G184500 Sobic002G286800--Sobic005G184500 Sobic005G185400 Sobic005G185400 Sobic002G286800--Sobic005G185400 Sobic002G286800--Sobic005G184400 Sobic007G025100 Sobic007G025100 Sobic002G286800--Sobic007G025100 Sobic005G227151 Sobic005G227151 Sobic003G099900--Sobic005G227151 Sobic002G105900 Sobic002G105900 Sobic003G099900--Sobic002G105900 Sobic004G207500 Sobic004G207500 Sobic003G099900--Sobic004G207500 Sobic007G196100 Sobic007G196100 Sobic003G099900--Sobic007G196100 Sobic003G326300 Sobic003G326300 Sobic003G099900--Sobic003G326300 Sobic003G099900--Sobic006G142850 Sobic003G099900--Sobic005G186250 Sobic005G189000 Sobic005G189000 Sobic003G099900--Sobic005G189000 Sobic003G099900--Sobic009G007100 Sobic007G131100--Sobic007G025100 Sobic007G131100--Sobic010G035000 Sobic007G131100--Sobic001G297700 Sobic007G131100--Sobic008G082300 Sobic007G131100--Sobic002G358000 Sobic002G300900 Sobic002G300900 Sobic007G131100--Sobic002G300900 Sobic007G131100--Sobic006G105300 Sobic008G184000 Sobic008G184000 Sobic007G131100--Sobic008G184000 Sobic007G131100--Sobic005G184400 Sobic008G082300--Sobic002G358000 Sobic008G082300--Sobic007G131100 Sobic008G082300--Sobic009G007100 Sobic008G082300--Sobic010G035000 Sobic003G415300 Sobic003G415300 Sobic008G082300--Sobic003G415300 Sobic008G082300--Sobic005G184400 Sobic008G082300--Sobic006G105300 Sobic008G082300--Sobic005G186250 Sobic008G082300--Sobic005G184600 Sobic008G069200 Sobic008G069200 Sobic008G188200--Sobic008G069200 Sobic005G178200 Sobic005G178200 Sobic008G188200--Sobic005G178200 Sobic008G188200--Sobic003G415300 Sobic008G188200--Sobic003G326300 Sobic005G058500 Sobic005G058500 Sobic008G188200--Sobic005G058500 Sobic008G188200--Sobic008G082300 Sobic010G195301 Sobic010G195301 Sobic008G188200--Sobic010G195301 Sobic009G086100 Sobic009G086100 Sobic008G188200--Sobic009G086100 Sobic008G188200--Sobic008G184000 Sobic008G064100--Sobic008G082300 Sobic008G064100--Sobic007G131100 Sobic008G064100--Sobic002G358000 Sobic005G035500 Sobic005G035500 Sobic008G064100--Sobic005G035500 Sobic008G064100--Sobic005G178200 Sobic008G064100--Sobic008G188200 Sobic008G064100--Sobic007G025100 Sobic008G064100--Sobic003G415300 Sobic008G064100--Sobic008G069200
Octagon: transcription factors


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