Gene annotation
Transcriptome id Sobic.010G207900.1,Sobic.010G207900.2
Synonym VTE2, TPT1, HPT1, Sb10g025475, ATHPT
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
prenyltransferase, putative, expressed
UniProt A0A194YKI4 , A0A1W0VU56
Pfam PF01040
Panther DB PTHR11048 PTHR11048:SF25
NCBI CDD -
KEGG Orthology K09833; HPT, HGGT, homogentisate phytyltransferase / homogentisate geranylgeranyltransferase
Gene Ontology GO:0016021; integral component of membrane GO:0004659prenyltransferase activity


Orthologs (automatic annotation)
TAIR AT2G18950 : homogentisate phytyltransferase 1
RAP-DB (Rice) LOC_Os06g43880.1 : prenyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a051354 , Zm00025a050729
Brachypodium PNT75359 , KQK16818
Barley -
Wheat TraesCS7B02G421600 , TraesCS7D02G500100 , TraesCS7D02G500100 , TraesCS7D02G500100 , TraesCS7D02G500100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G018751 - -
2 Sobic.007G086701 - -
3 Sobic.007G126000 - -
4 Sobic.001G264600 - -
5 Sobic.004G322901 - -
6 Sobic.002G174500 OsFBX252 - F-box domain containing protein, expressed -
7 Sobic.009G056100 splicing factor, arginine/serine-rich, putative, expressed -
8 Sobic.005G083280 - -
9 Sobic.001G261529 - -
10 Sobic.002G266600 - K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
11 Sobic.006G062600 TUDOR protein with multiple SNc domains, putative, expressed K15979: staphylococcal nuclease domain-containing protein 1
12 Sobic.002G066700 OsFBL33 - F-box domain and LRR containing protein, expressed -
13 Sobic.002G147466 - -
14 Sobic.001G194500 - -
15 Sobic.003G055200 expressed protein -
16 Sobic.002G099866 - -
17 Sobic.003G092600 seven in absentia protein family protein, expressed -
18 Sobic.004G163700 "1,4-alpha-glucan-branching enzyme 2"(PubMedID : 26186930)@"1,4-alpha-glucan branching enzyme IIB (Zm)"(PubMedID : 27208977)@Starch synthesis(PubMedID : 31624872)@"SbeIIb(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659883)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
19 Sobic.006G015800 "1,4-alpha-glucan branching enzyme/starch branching enzyme II, PULLULANASE 1, CHLOROPLASTIC"(PubMedID : 21853065)@Alpha amylase, catalytic domain containing protein, expressed -
20 Sobic.009G014900 expressed protein -


Gene co-expression network
sample Sobic010G207900 Sobic010G207900 Sobic006G018751 Sobic006G018751 Sobic010G207900--Sobic006G018751 Sobic007G086701 Sobic007G086701 Sobic010G207900--Sobic007G086701 Sobic007G126000 Sobic007G126000 Sobic010G207900--Sobic007G126000 Sobic001G264600 Sobic001G264600 Sobic010G207900--Sobic001G264600 Sobic004G322901 Sobic004G322901 Sobic010G207900--Sobic004G322901 Sobic002G174500 Sobic002G174500 Sobic010G207900--Sobic002G174500 Sobic009G056100 Sobic009G056100 Sobic010G207900--Sobic009G056100 Sobic005G083280 Sobic005G083280 Sobic010G207900--Sobic005G083280 Sobic001G261529 Sobic001G261529 Sobic010G207900--Sobic001G261529 Sobic006G018751--Sobic007G086701 Sobic006G018751--Sobic010G207900 Sobic006G018751--Sobic001G264600 Sobic006G018751--Sobic001G261529 Sobic006G018751--Sobic005G083280 Sobic006G018751--Sobic007G126000 Sobic006G018751--Sobic004G322901 Sobic002G266600 Sobic002G266600 Sobic006G018751--Sobic002G266600 Sobic002G066700 Sobic002G066700 Sobic006G018751--Sobic002G066700 Sobic007G086701--Sobic006G018751 Sobic007G086701--Sobic001G264600 Sobic007G086701--Sobic002G266600 Sobic007G086701--Sobic010G207900 Sobic007G086701--Sobic001G261529 Sobic007G086701--Sobic002G066700 Sobic007G086701--Sobic005G083280 Sobic007G086701--Sobic004G322901 Sobic002G099866 Sobic002G099866 Sobic007G086701--Sobic002G099866 Sobic007G126000--Sobic010G207900 Sobic007G126000--Sobic006G018751 Sobic007G126000--Sobic004G322901 Sobic007G126000--Sobic009G056100 Sobic007G126000--Sobic005G083280 Sobic002G286800 Sobic002G286800 Sobic007G126000--Sobic002G286800 Sobic007G126000--Sobic007G086701 Sobic009G202200 Sobic009G202200 Sobic007G126000--Sobic009G202200 Sobic001G371600 Sobic001G371600 Sobic007G126000--Sobic001G371600 Sobic001G264600--Sobic007G086701 Sobic001G264600--Sobic002G266600 Sobic001G264600--Sobic006G018751 Sobic001G264600--Sobic001G261529 Sobic001G264600--Sobic005G083280 Sobic001G264600--Sobic002G099866 Sobic001G264600--Sobic002G066700 Sobic001G264600--Sobic004G322901 Sobic003G167200 Sobic003G167200 Sobic001G264600--Sobic003G167200 Sobic004G322901--Sobic005G083280 Sobic004G322901--Sobic001G261529 Sobic003G092600 Sobic003G092600 Sobic004G322901--Sobic003G092600 Sobic009G014900 Sobic009G014900 Sobic004G322901--Sobic009G014900 Sobic006G015800 Sobic006G015800 Sobic004G322901--Sobic006G015800 Sobic004G322901--Sobic007G126000 Sobic002G147466 Sobic002G147466 Sobic004G322901--Sobic002G147466 Sobic004G322901--Sobic006G018751 Sobic002G015800 Sobic002G015800 Sobic004G322901--Sobic002G015800 Sobic002G174500--Sobic002G147466 Sobic002G174500--Sobic004G322901 Sobic002G174500--Sobic010G207900 Sobic002G174500--Sobic007G126000 Sobic002G174500--Sobic005G083280 Sobic002G174500--Sobic001G261529 Sobic002G174500--Sobic006G018751 Sobic002G174500--Sobic009G014900 Sobic002G174500--Sobic007G086701 Sobic009G056100--Sobic007G126000 Sobic009G056100--Sobic010G207900 Sobic002G358000 Sobic002G358000 Sobic009G056100--Sobic002G358000 Sobic009G056100--Sobic002G286800 Sobic003G099900 Sobic003G099900 Sobic009G056100--Sobic003G099900 Sobic007G131100 Sobic007G131100 Sobic009G056100--Sobic007G131100 Sobic008G082300 Sobic008G082300 Sobic009G056100--Sobic008G082300 Sobic008G188200 Sobic008G188200 Sobic009G056100--Sobic008G188200 Sobic008G064100 Sobic008G064100 Sobic009G056100--Sobic008G064100 Sobic005G083280--Sobic001G261529 Sobic005G083280--Sobic004G322901 Sobic005G083280--Sobic003G092600 Sobic005G083280--Sobic002G015800 Sobic005G083280--Sobic001G264600 Sobic005G083280--Sobic006G018751 Sobic005G083280--Sobic006G015800 Sobic005G083280--Sobic007G086701 Sobic005G083280--Sobic009G014900 Sobic001G261529--Sobic005G083280 Sobic001G261529--Sobic004G322901 Sobic001G261529--Sobic001G264600 Sobic001G261529--Sobic003G092600 Sobic001G261529--Sobic002G015800 Sobic001G261529--Sobic002G266600 Sobic001G261529--Sobic007G086701 Sobic001G261529--Sobic006G018751 Sobic001G261529--Sobic002G099866
Octagon: transcription factors


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