Gene annotation
Transcriptome id Sobic.007G001900.1
Synonym Sb07g000370
Functional annotation harpin-induced protein 1 domain containing protein, expressed
UniProt C5YLD7
Pfam PF03168
Panther DB PTHR31415 PTHR31415:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G44220 : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
RAP-DB (Rice) LOC_Os08g01220.1 : harpin-induced protein 1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a040118
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.007G001900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G112800 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
2 Sobic.009G144200 glycosyl transferase, putative, expressed -
3 Sobic.002G276600 endoglucanase, putative, expressed -
4 Sobic.008G055000 - -
5 Sobic.010G090500 expressed protein -
6 Sobic.009G226900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein, putative, expressed -
7 Sobic.004G243800 HEAT repeat family protein, putative, expressed -
8 Sobic.001G316000 protein kinase domain containing protein, expressed -
9 Sobic.003G098500 - -
10 Sobic.001G534532 - -
11 Sobic.003G134900 plastocyanin-like domain containing protein, putative, expressed -
12 Sobic.004G344200 HEAT repeat family protein, putative, expressed K16578: CLIP-associating protein 1/2
13 Sobic.001G336700 "Involved in secondary cell wall formation. Reduced mechanical strength in culms and leaves, thinner cell walls, reduced cellulose content, increased lignin content, in the mutant. The highest gene expression level in culms. The highest expression levels in vascular bundles and in sub-epidermal regions, where developing sclerenchyma cells are located."(PubMedID : 30590744)@COBRA-like protein precursor, putative, expressed -
14 Sobic.008G174966 - -
15 Sobic.001G073150 - K15449: tRNA wybutosine-synthesizing protein 1
16 Sobic.004G168700 harpin-induced protein 1 domain containing protein, expressed -
17 Sobic.002G118700 -(PubMedID : 28944535)@CESA3 - cellulose synthase, expressed K10999: cellulose synthase A
18 Sobic.008G174900 IQ calmodulin-binding motif domain containing protein, expressed -
19 Sobic.009G125900 expressed protein -
20 Sobic.009G063400 "CESA1-like or CESA10-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA1 - cellulose synthase, expressed K10999: cellulose synthase A


Gene co-expression network
sample Sobic007G001900 Sobic007G001900 Sobic010G112800 Sobic010G112800 Sobic007G001900--Sobic010G112800 Sobic009G144200 Sobic009G144200 Sobic007G001900--Sobic009G144200 Sobic002G276600 Sobic002G276600 Sobic007G001900--Sobic002G276600 Sobic008G055000 Sobic008G055000 Sobic007G001900--Sobic008G055000 Sobic010G090500 Sobic010G090500 Sobic007G001900--Sobic010G090500 Sobic009G226900 Sobic009G226900 Sobic007G001900--Sobic009G226900 Sobic004G243800 Sobic004G243800 Sobic007G001900--Sobic004G243800 Sobic001G316000 Sobic001G316000 Sobic007G001900--Sobic001G316000 Sobic003G098500 Sobic003G098500 Sobic007G001900--Sobic003G098500 Sobic003G153400 Sobic003G153400 Sobic010G112800--Sobic003G153400 Sobic010G112800--Sobic007G001900 Sobic001G336700 Sobic001G336700 Sobic010G112800--Sobic001G336700 Sobic009G241600 Sobic009G241600 Sobic010G112800--Sobic009G241600 Sobic010G112800--Sobic009G226900 Sobic006G166800 Sobic006G166800 Sobic010G112800--Sobic006G166800 Sobic003G352800 Sobic003G352800 Sobic010G112800--Sobic003G352800 Sobic007G027200 Sobic007G027200 Sobic010G112800--Sobic007G027200 Sobic005G087200 Sobic005G087200 Sobic010G112800--Sobic005G087200 Sobic004G243400 Sobic004G243400 Sobic009G144200--Sobic004G243400 Sobic009G144200--Sobic007G001900 Sobic008G064601 Sobic008G064601 Sobic009G144200--Sobic008G064601 Sobic009G055900 Sobic009G055900 Sobic009G144200--Sobic009G055900 Sobic001G021500 Sobic001G021500 Sobic009G144200--Sobic001G021500 Sobic003G134900 Sobic003G134900 Sobic009G144200--Sobic003G134900 Sobic008G190500 Sobic008G190500 Sobic009G144200--Sobic008G190500 Sobic004G168700 Sobic004G168700 Sobic009G144200--Sobic004G168700 Sobic010G126100 Sobic010G126100 Sobic009G144200--Sobic010G126100 Sobic009G061000 Sobic009G061000 Sobic002G276600--Sobic009G061000 Sobic001G437500 Sobic001G437500 Sobic002G276600--Sobic001G437500 Sobic001G099100 Sobic001G099100 Sobic002G276600--Sobic001G099100 Sobic008G174900 Sobic008G174900 Sobic002G276600--Sobic008G174900 Sobic006G267500 Sobic006G267500 Sobic002G276600--Sobic006G267500 Sobic002G276600--Sobic004G243800 Sobic009G026101 Sobic009G026101 Sobic002G276600--Sobic009G026101 Sobic004G051300 Sobic004G051300 Sobic002G276600--Sobic004G051300 Sobic002G276600--Sobic010G090500 Sobic008G055000--Sobic007G001900 Sobic008G055000--Sobic009G226900 Sobic008G055000--Sobic003G098500 Sobic008G055000--Sobic004G168700 Sobic008G055000--Sobic005G087200 Sobic010G196400 Sobic010G196400 Sobic008G055000--Sobic010G196400 Sobic008G112200 Sobic008G112200 Sobic008G055000--Sobic008G112200 Sobic010G199700 Sobic010G199700 Sobic008G055000--Sobic010G199700 Sobic003G085200 Sobic003G085200 Sobic008G055000--Sobic003G085200 Sobic001G159800 Sobic001G159800 Sobic010G090500--Sobic001G159800 Sobic010G120300 Sobic010G120300 Sobic010G090500--Sobic010G120300 Sobic009G206500 Sobic009G206500 Sobic010G090500--Sobic009G206500 Sobic009G079100 Sobic009G079100 Sobic010G090500--Sobic009G079100 Sobic010G090500--Sobic001G437500 Sobic010G090500--Sobic006G267500 Sobic001G073150 Sobic001G073150 Sobic010G090500--Sobic001G073150 Sobic010G090500--Sobic009G061000 Sobic009G125900 Sobic009G125900 Sobic010G090500--Sobic009G125900 Sobic003G062000 Sobic003G062000 Sobic009G226900--Sobic003G062000 Sobic001G224300 Sobic001G224300 Sobic009G226900--Sobic001G224300 Sobic003G296400 Sobic003G296400 Sobic009G226900--Sobic003G296400 Sobic002G205500 Sobic002G205500 Sobic009G226900--Sobic002G205500 Sobic003G387500 Sobic003G387500 Sobic009G226900--Sobic003G387500 Sobic006G036400 Sobic006G036400 Sobic009G226900--Sobic006G036400 Sobic001G406700 Sobic001G406700 Sobic009G226900--Sobic001G406700 Sobic009G226900--Sobic005G087200 Sobic006G075000 Sobic006G075000 Sobic009G226900--Sobic006G075000 Sobic004G243800--Sobic001G437500 Sobic001G037400 Sobic001G037400 Sobic004G243800--Sobic001G037400 Sobic001G196000 Sobic001G196000 Sobic004G243800--Sobic001G196000 Sobic010G165100 Sobic010G165100 Sobic004G243800--Sobic010G165100 Sobic004G243800--Sobic002G276600 Sobic009G211800 Sobic009G211800 Sobic004G243800--Sobic009G211800 Sobic004G243800--Sobic008G174900 Sobic002G045200 Sobic002G045200 Sobic004G243800--Sobic002G045200 Sobic002G142500 Sobic002G142500 Sobic004G243800--Sobic002G142500 Sobic003G161500 Sobic003G161500 Sobic001G316000--Sobic003G161500 Sobic008G097500 Sobic008G097500 Sobic001G316000--Sobic008G097500 Sobic010G022400 Sobic010G022400 Sobic001G316000--Sobic010G022400 Sobic001G316000--Sobic009G226900 Sobic001G316000--Sobic004G243800 Sobic001G316000--Sobic007G001900 Sobic001G316000--Sobic001G336700 Sobic001G316000--Sobic010G090500 Sobic001G316000--Sobic003G134900 Sobic003G098500--Sobic002G276600 Sobic003G098500--Sobic001G099100 Sobic003G098500--Sobic009G226900 Sobic003G098500--Sobic009G026101 Sobic003G098500--Sobic008G055000 Sobic003G098500--Sobic008G174900 Sobic003G098500--Sobic006G267500 Sobic003G098500--Sobic009G061000 Sobic009G153800 Sobic009G153800 Sobic003G098500--Sobic009G153800
Octagon: transcription factors


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