Gene annotation
Transcriptome id Sobic.004G304400.1,Sobic.004G304400.2
Synonym Sb04g033750
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
UniProt A0A194YSN1 , C5XSQ6
Pfam PF08659 PF00106
Panther DB PTHR24322 PTHR24322:SF453
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology K15095; (+)-neomenthol dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT1G01800 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os02g42810.1 : oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020989
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G025700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@amino acid transporter, putative, expressed -
2 Sobic.008G111100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transporter family protein, putative, expressed -
3 Sobic.009G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
4 Sobic.004G307000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF1645 domain containing protein, putative, expressed -
5 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -
6 Sobic.003G019200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
7 Sobic.003G189200 expressed protein -
8 Sobic.010G224200 MYB family transcription factor, putative, expressed -
9 Sobic.002G195900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
10 Sobic.001G474200 ras-related protein, putative, expressed K07893: Ras-related protein Rab-6A
11 Sobic.003G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pleiotropic drug resistance protein, putative, expressed -
12 Sobic.003G429300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@NADPH quinone oxidoreductase, putative, expressed -
13 Sobic.002G224100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
14 Sobic.004G205000 cytosolic Fe-S cluster assembling factor NBP35, putative, expressed -
15 Sobic.005G212700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
16 Sobic.001G319500 Relative abundance under control condition and upregulated in cold susceptible sorghum under cold stress(PubMedID : 26645959)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.007G198100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@membrane protein, putative, expressed -
18 Sobic.004G277000 purine permease, putative, expressed -
19 Sobic.001G147200 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
20 Sobic.002G090200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytidine deaminase, putative, expressed -


Gene co-expression network
sample Sobic004G304400 Sobic004G304400 Sobic007G025700 Sobic007G025700 Sobic004G304400--Sobic007G025700 Sobic008G111100 Sobic008G111100 Sobic004G304400--Sobic008G111100 Sobic009G177800 Sobic009G177800 Sobic004G304400--Sobic009G177800 Sobic004G307000 Sobic004G307000 Sobic004G304400--Sobic004G307000 Sobic005G117400 Sobic005G117400 Sobic004G304400--Sobic005G117400 Sobic003G019200 Sobic003G019200 Sobic004G304400--Sobic003G019200 Sobic003G189200 Sobic003G189200 Sobic004G304400--Sobic003G189200 Sobic010G224200 Sobic010G224200 Sobic004G304400--Sobic010G224200 Sobic002G195900 Sobic002G195900 Sobic004G304400--Sobic002G195900 Sobic007G025700--Sobic004G304400 Sobic002G224100 Sobic002G224100 Sobic007G025700--Sobic002G224100 Sobic007G025700--Sobic004G307000 Sobic007G025700--Sobic008G111100 Sobic007G025700--Sobic003G189200 Sobic007G025700--Sobic005G117400 Sobic007G025700--Sobic009G177800 Sobic004G158901 Sobic004G158901 Sobic007G025700--Sobic004G158901 Sobic001G474200 Sobic001G474200 Sobic007G025700--Sobic001G474200 Sobic008G111100--Sobic009G177800 Sobic003G429300 Sobic003G429300 Sobic008G111100--Sobic003G429300 Sobic008G111100--Sobic004G307000 Sobic008G111100--Sobic003G019200 Sobic009G155200 Sobic009G155200 Sobic008G111100--Sobic009G155200 Sobic007G171000 Sobic007G171000 Sobic008G111100--Sobic007G171000 Sobic008G111100--Sobic002G195900 Sobic008G111100--Sobic010G224200 Sobic002G423300 Sobic002G423300 Sobic008G111100--Sobic002G423300 Sobic002G183200 Sobic002G183200 Sobic009G177800--Sobic002G183200 Sobic009G177800--Sobic004G307000 Sobic009G177800--Sobic008G111100 Sobic001G119100 Sobic001G119100 Sobic009G177800--Sobic001G119100 Sobic009G177800--Sobic002G195900 Sobic001G119000 Sobic001G119000 Sobic009G177800--Sobic001G119000 Sobic006G173900 Sobic006G173900 Sobic009G177800--Sobic006G173900 Sobic004G167800 Sobic004G167800 Sobic009G177800--Sobic004G167800 Sobic009G177800--Sobic007G171000 Sobic004G307000--Sobic009G177800 Sobic003G322900 Sobic003G322900 Sobic004G307000--Sobic003G322900 Sobic007G137700 Sobic007G137700 Sobic004G307000--Sobic007G137700 Sobic004G307000--Sobic008G111100 Sobic004G307000--Sobic002G195900 Sobic002G055600 Sobic002G055600 Sobic004G307000--Sobic002G055600 Sobic004G050000 Sobic004G050000 Sobic004G307000--Sobic004G050000 Sobic004G307000--Sobic002G423300 Sobic002G117100 Sobic002G117100 Sobic004G307000--Sobic002G117100 Sobic005G117400--Sobic004G158901 Sobic007G125900 Sobic007G125900 Sobic005G117400--Sobic007G125900 Sobic004G058000 Sobic004G058000 Sobic005G117400--Sobic004G058000 Sobic002G249000 Sobic002G249000 Sobic005G117400--Sobic002G249000 Sobic003G348400 Sobic003G348400 Sobic005G117400--Sobic003G348400 Sobic005G117400--Sobic004G050000 Sobic003G232900 Sobic003G232900 Sobic005G117400--Sobic003G232900 Sobic005G117400--Sobic007G025700 Sobic005G117400--Sobic010G224200 Sobic010G246000 Sobic010G246000 Sobic003G019200--Sobic010G246000 Sobic001G147200 Sobic001G147200 Sobic003G019200--Sobic001G147200 Sobic009G200700 Sobic009G200700 Sobic003G019200--Sobic009G200700 Sobic001G399100 Sobic001G399100 Sobic003G019200--Sobic001G399100 Sobic007G198100 Sobic007G198100 Sobic003G019200--Sobic007G198100 Sobic002G374100 Sobic002G374100 Sobic003G019200--Sobic002G374100 Sobic003G019200--Sobic003G429300 Sobic003G019200--Sobic010G224200 Sobic003G019200--Sobic008G111100 Sobic003G189200--Sobic002G224100 Sobic003G189200--Sobic007G025700 Sobic003G189200--Sobic004G307000 Sobic003G189200--Sobic004G304400 Sobic003G363200 Sobic003G363200 Sobic003G189200--Sobic003G363200 Sobic003G189200--Sobic003G429300 Sobic003G189200--Sobic001G474200 Sobic003G189200--Sobic008G111100 Sobic005G212700 Sobic005G212700 Sobic003G189200--Sobic005G212700 Sobic010G224200--Sobic003G019200 Sobic010G224200--Sobic002G249000 Sobic010G224200--Sobic009G177800 Sobic010G224200--Sobic004G058000 Sobic010G224200--Sobic008G111100 Sobic010G224200--Sobic002G423300 Sobic010G224200--Sobic004G307000 Sobic010G224200--Sobic004G050000 Sobic010G107100 Sobic010G107100 Sobic010G224200--Sobic010G107100 Sobic002G359300 Sobic002G359300 Sobic002G195900--Sobic002G359300 Sobic001G040200 Sobic001G040200 Sobic002G195900--Sobic001G040200 Sobic002G195900--Sobic007G171000 Sobic003G334600 Sobic003G334600 Sobic002G195900--Sobic003G334600 Sobic002G356101 Sobic002G356101 Sobic002G195900--Sobic002G356101 Sobic002G195900--Sobic009G177800 Sobic009G183300 Sobic009G183300 Sobic002G195900--Sobic009G183300 Sobic002G195900--Sobic002G055600 Sobic003G430400 Sobic003G430400 Sobic002G195900--Sobic003G430400
Octagon: transcription factors


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