Gene annotation
Transcriptome id Sobic.007G025700.1
Synonym Sb07g002250, LHT1
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
amino acid transporter, putative, expressed
UniProt C5YMJ8
Pfam PF01490
Panther DB PTHR22950 PTHR22950:SF235
NCBI CDD KOG1303; Amino acid transporters
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G40780 : lysine histidine transporter 1
RAP-DB (Rice) LOC_Os08g03350.1 : amino acid transporter, putative, expressed
MaizeGDB (Corn) Zm00025a040345 , Zm00025a011107 , Zm00025a030209 , Zm00025a040337 , Zm00025a054737 , Zm00025a040338 , Zm00025a040344 , Zm00025a009656 , Zm00025a040343
Brachypodium PNT71577 , KQJ94928 , KQJ94929
Barley HORVU7Hr1G032060.4 , HORVU7Hr1G032060.5 , HORVU7Hr1G032060.2 , HORVU7Hr1G032060.3 , HORVU7Hr1G032060.1 , HORVU2Hr1G123160.6 , HORVU2Hr1G123160.3 , HORVU7Hr1G074640.12 , HORVU7Hr1G074640.13 , HORVU7Hr1G074640.10 , HORVU7Hr1G074640.11 , HORVU7Hr1G074640.16 , HORVU7Hr1G074640.17 , HORVU7Hr1G074640.14 , HORVU7Hr1G074640.15 , HORVU7Hr1G074640.18 , HORVU7Hr1G074640.19 , HORVU7Hr1G074640.2 , HORVU7Hr1G074640.3 , HORVU7Hr1G074640.4 , HORVU7Hr1G074640.5 , HORVU7Hr1G074640.6 , HORVU7Hr1G074640.7 , HORVU7Hr1G074640.23 , HORVU7Hr1G074640.22 , HORVU7Hr1G074640.21 , HORVU7Hr1G074640.20 , HORVU7Hr1G074640.27 , HORVU7Hr1G074640.26 , HORVU7Hr1G074640.25 , HORVU7Hr1G074640.24 , HORVU7Hr1G074640.9 , HORVU7Hr1G074660.6 , HORVU7Hr1G074660.7 , HORVU7Hr1G074660.4 , HORVU7Hr1G074660.5 , HORVU7Hr1G074660.2 , HORVU7Hr1G074660.3 , HORVU7Hr1G074660.1 , HORVU7Hr1G074660.8 , HORVU7Hr1G074660.9 , HORVU2Hr1G123160.2 , HORVU2Hr1G123160.1 , HORVU2Hr1G123160.7 , HORVU2Hr1G123160.5 , HORVU2Hr1G123160.4 , HORVU2Hr1G123160.8 , HORVU7Hr1G074660.10 , HORVU7Hr1G074660.11 , HORVU7Hr1G074660.12 , HORVU7Hr1G074640.8
Wheat TraesCS7B02G060400 , TraesCS7D02G309200 , TraesCS7A02G312800 , TraesCS7D02G157000 , TraesCS2A02G584328 , TraesCS7A02G313000 , TraesCS7B02G213000 , TraesCS2B02G602449 , TraesCS7A02G156600 , TraesCS7B02G212500 , TraesCS7D02G309400 , TraesCS2D02G595500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G304400 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K15095: (+)-neomenthol dehydrogenase
2 Sobic.002G224100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
3 Sobic.004G307000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF1645 domain containing protein, putative, expressed -
4 Sobic.008G111100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transporter family protein, putative, expressed -
5 Sobic.003G189200 expressed protein -
6 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -
7 Sobic.009G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
8 Sobic.004G158901 - -
9 Sobic.001G474200 ras-related protein, putative, expressed K07893: Ras-related protein Rab-6A
10 Sobic.010G224200 MYB family transcription factor, putative, expressed -
11 Sobic.003G429300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@NADPH quinone oxidoreductase, putative, expressed -
12 Sobic.003G019200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
13 Sobic.002G195900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
14 Sobic.005G212700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.009G041000 sucrose phosphate phos- phatase(PubMedID : 26616172)@sucrose-phosphatase, putative, expressed -
16 Sobic.007G171000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
17 Sobic.005G105300 expressed protein -
18 Sobic.009G241700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
19 Sobic.004G205000 cytosolic Fe-S cluster assembling factor NBP35, putative, expressed -
20 Sobic.002G210901 - -


Gene co-expression network
sample Sobic007G025700 Sobic007G025700 Sobic004G304400 Sobic004G304400 Sobic007G025700--Sobic004G304400 Sobic002G224100 Sobic002G224100 Sobic007G025700--Sobic002G224100 Sobic004G307000 Sobic004G307000 Sobic007G025700--Sobic004G307000 Sobic008G111100 Sobic008G111100 Sobic007G025700--Sobic008G111100 Sobic003G189200 Sobic003G189200 Sobic007G025700--Sobic003G189200 Sobic005G117400 Sobic005G117400 Sobic007G025700--Sobic005G117400 Sobic009G177800 Sobic009G177800 Sobic007G025700--Sobic009G177800 Sobic004G158901 Sobic004G158901 Sobic007G025700--Sobic004G158901 Sobic001G474200 Sobic001G474200 Sobic007G025700--Sobic001G474200 Sobic004G304400--Sobic007G025700 Sobic004G304400--Sobic008G111100 Sobic004G304400--Sobic009G177800 Sobic004G304400--Sobic004G307000 Sobic004G304400--Sobic005G117400 Sobic003G019200 Sobic003G019200 Sobic004G304400--Sobic003G019200 Sobic004G304400--Sobic003G189200 Sobic010G224200 Sobic010G224200 Sobic004G304400--Sobic010G224200 Sobic002G195900 Sobic002G195900 Sobic004G304400--Sobic002G195900 Sobic002G224100--Sobic004G158901 Sobic003G429300 Sobic003G429300 Sobic002G224100--Sobic003G429300 Sobic002G224100--Sobic007G025700 Sobic002G224100--Sobic004G307000 Sobic002G224100--Sobic003G189200 Sobic002G224100--Sobic005G117400 Sobic002G379866 Sobic002G379866 Sobic002G224100--Sobic002G379866 Sobic007G171000 Sobic007G171000 Sobic002G224100--Sobic007G171000 Sobic002G224100--Sobic008G111100 Sobic004G307000--Sobic009G177800 Sobic003G322900 Sobic003G322900 Sobic004G307000--Sobic003G322900 Sobic007G137700 Sobic007G137700 Sobic004G307000--Sobic007G137700 Sobic004G307000--Sobic008G111100 Sobic004G307000--Sobic002G195900 Sobic002G055600 Sobic002G055600 Sobic004G307000--Sobic002G055600 Sobic004G050000 Sobic004G050000 Sobic004G307000--Sobic004G050000 Sobic002G423300 Sobic002G423300 Sobic004G307000--Sobic002G423300 Sobic002G117100 Sobic002G117100 Sobic004G307000--Sobic002G117100 Sobic008G111100--Sobic009G177800 Sobic008G111100--Sobic003G429300 Sobic008G111100--Sobic004G307000 Sobic008G111100--Sobic003G019200 Sobic009G155200 Sobic009G155200 Sobic008G111100--Sobic009G155200 Sobic008G111100--Sobic007G171000 Sobic008G111100--Sobic002G195900 Sobic008G111100--Sobic010G224200 Sobic008G111100--Sobic002G423300 Sobic003G189200--Sobic002G224100 Sobic003G189200--Sobic007G025700 Sobic003G189200--Sobic004G307000 Sobic003G189200--Sobic004G304400 Sobic003G363200 Sobic003G363200 Sobic003G189200--Sobic003G363200 Sobic003G189200--Sobic003G429300 Sobic003G189200--Sobic001G474200 Sobic003G189200--Sobic008G111100 Sobic005G212700 Sobic005G212700 Sobic003G189200--Sobic005G212700 Sobic005G117400--Sobic004G158901 Sobic007G125900 Sobic007G125900 Sobic005G117400--Sobic007G125900 Sobic004G058000 Sobic004G058000 Sobic005G117400--Sobic004G058000 Sobic002G249000 Sobic002G249000 Sobic005G117400--Sobic002G249000 Sobic003G348400 Sobic003G348400 Sobic005G117400--Sobic003G348400 Sobic005G117400--Sobic004G050000 Sobic003G232900 Sobic003G232900 Sobic005G117400--Sobic003G232900 Sobic005G117400--Sobic007G025700 Sobic005G117400--Sobic010G224200 Sobic002G183200 Sobic002G183200 Sobic009G177800--Sobic002G183200 Sobic009G177800--Sobic004G307000 Sobic009G177800--Sobic008G111100 Sobic001G119100 Sobic001G119100 Sobic009G177800--Sobic001G119100 Sobic009G177800--Sobic002G195900 Sobic001G119000 Sobic001G119000 Sobic009G177800--Sobic001G119000 Sobic006G173900 Sobic006G173900 Sobic009G177800--Sobic006G173900 Sobic004G167800 Sobic004G167800 Sobic009G177800--Sobic004G167800 Sobic009G177800--Sobic007G171000 Sobic004G158901--Sobic002G224100 Sobic004G158901--Sobic005G117400 Sobic004G158901--Sobic004G058000 Sobic009G241700 Sobic009G241700 Sobic004G158901--Sobic009G241700 Sobic006G192500 Sobic006G192500 Sobic004G158901--Sobic006G192500 Sobic001G399100 Sobic001G399100 Sobic004G158901--Sobic001G399100 Sobic004G158901--Sobic002G379866 Sobic004G158901--Sobic007G025700 Sobic010G163000 Sobic010G163000 Sobic004G158901--Sobic010G163000 Sobic002G104900 Sobic002G104900 Sobic001G474200--Sobic002G104900 Sobic001G474200--Sobic001G119100 Sobic003G227300 Sobic003G227300 Sobic001G474200--Sobic003G227300 Sobic001G474200--Sobic003G429300 Sobic001G474200--Sobic009G177800 Sobic001G474200--Sobic001G119000 Sobic001G474200--Sobic008G111100 Sobic007G198100 Sobic007G198100 Sobic001G474200--Sobic007G198100 Sobic002G211900 Sobic002G211900 Sobic001G474200--Sobic002G211900
Octagon: transcription factors


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