Gene annotation
Transcriptome id Sobic.001G474200.1,Sobic.001G474200.2
Synonym Sb01g044440, ATRAB6A, RAB6, RAB6A, ATRABH1B
Functional annotation ras-related protein, putative, expressed
UniProt A0A1B6QPZ1 , A0A1B6QQ00
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF475
NCBI CDD KOG0094; GTPase Rab6/YPT6/Ryh1, small G protein superfamily
KEGG Orthology K07893; Ras-related protein Rab-6A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT2G44610 : Ras-related small GTP-binding family protein
RAP-DB (Rice) LOC_Os03g09140.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a015240 , Zm00025a001050 , Zm00025a014724 , Zm00025a017179
Brachypodium KQK16142 , PNT77995
Barley HORVU4Hr1G078690.1 , HORVU4Hr1G078690.2 , HORVU4Hr1G078690.3 , HORVU4Hr1G078690.4 , HORVU4Hr1G078690.5 , HORVU4Hr1G078690.6 , HORVU4Hr1G078690.7
Wheat TraesCS2D02G234600 , TraesCS4A02G407500 , TraesCS4B02G306900 , TraesCS2A02G236600 , TraesCS2A02G236600 , TraesCS4D02G305100 , TraesCS2B02G261200
Populus PNT18225


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G104900 B12D protein, putative, expressed -
2 Sobic.001G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
3 Sobic.003G227300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY11, expressed -
4 Sobic.003G429300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@NADPH quinone oxidoreductase, putative, expressed -
5 Sobic.009G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
6 Sobic.001G119000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
7 Sobic.008G111100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transporter family protein, putative, expressed -
8 Sobic.007G198100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@membrane protein, putative, expressed -
9 Sobic.002G211900 zinc finger, C3HC4 type domain containing protein, expressed K16274: E3 ubiquitin-protein ligase AIP2
10 Sobic.001G329800 allene oxide cyclase 4, chloroplast precursor, putative, expressed K10525: allene oxide cyclase
11 Sobic.006G062800 OTU-like cysteine protease family protein, putative, expressed -
12 Sobic.006G173900 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
13 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
14 Sobic.003G430400 OsCML31 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
15 Sobic.006G148000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
16 Sobic.004G307000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF1645 domain containing protein, putative, expressed -
17 Sobic.007G145600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-Coumarate-CoA ligase(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
18 Sobic.003G152100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed -
19 Sobic.002G183200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
20 Sobic.002G117100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cyclin-dependent kinase G-1, putative, expressed K08818: cell division cycle 2-like


Gene co-expression network
sample Sobic001G474200 Sobic001G474200 Sobic002G104900 Sobic002G104900 Sobic001G474200--Sobic002G104900 Sobic001G119100 Sobic001G119100 Sobic001G474200--Sobic001G119100 Sobic003G227300 Sobic003G227300 Sobic001G474200--Sobic003G227300 Sobic003G429300 Sobic003G429300 Sobic001G474200--Sobic003G429300 Sobic009G177800 Sobic009G177800 Sobic001G474200--Sobic009G177800 Sobic001G119000 Sobic001G119000 Sobic001G474200--Sobic001G119000 Sobic008G111100 Sobic008G111100 Sobic001G474200--Sobic008G111100 Sobic007G198100 Sobic007G198100 Sobic001G474200--Sobic007G198100 Sobic002G211900 Sobic002G211900 Sobic001G474200--Sobic002G211900 Sobic001G317000 Sobic001G317000 Sobic002G104900--Sobic001G317000 Sobic007G145600 Sobic007G145600 Sobic002G104900--Sobic007G145600 Sobic010G178500 Sobic010G178500 Sobic002G104900--Sobic010G178500 Sobic001G015100 Sobic001G015100 Sobic002G104900--Sobic001G015100 Sobic009G141800 Sobic009G141800 Sobic002G104900--Sobic009G141800 Sobic002G140400 Sobic002G140400 Sobic002G104900--Sobic002G140400 Sobic004G088551 Sobic004G088551 Sobic002G104900--Sobic004G088551 Sobic003G094200 Sobic003G094200 Sobic002G104900--Sobic003G094200 Sobic002G263400 Sobic002G263400 Sobic002G104900--Sobic002G263400 Sobic001G119100--Sobic001G119000 Sobic002G183200 Sobic002G183200 Sobic001G119100--Sobic002G183200 Sobic001G119100--Sobic003G227300 Sobic001G119100--Sobic007G145600 Sobic005G091500 Sobic005G091500 Sobic001G119100--Sobic005G091500 Sobic004G189400 Sobic004G189400 Sobic001G119100--Sobic004G189400 Sobic010G084400 Sobic010G084400 Sobic001G119100--Sobic010G084400 Sobic007G061300 Sobic007G061300 Sobic001G119100--Sobic007G061300 Sobic001G339700 Sobic001G339700 Sobic001G119100--Sobic001G339700 Sobic003G227300--Sobic001G119100 Sobic003G227300--Sobic002G183200 Sobic001G025300 Sobic001G025300 Sobic003G227300--Sobic001G025300 Sobic003G227300--Sobic007G145600 Sobic003G227300--Sobic001G339700 Sobic004G071650 Sobic004G071650 Sobic003G227300--Sobic004G071650 Sobic001G331301 Sobic001G331301 Sobic003G227300--Sobic001G331301 Sobic009G120000 Sobic009G120000 Sobic003G227300--Sobic009G120000 Sobic005G045900 Sobic005G045900 Sobic003G227300--Sobic005G045900 Sobic007G171000 Sobic007G171000 Sobic003G429300--Sobic007G171000 Sobic006G179500 Sobic006G179500 Sobic003G429300--Sobic006G179500 Sobic003G429300--Sobic008G111100 Sobic002G224100 Sobic002G224100 Sobic003G429300--Sobic002G224100 Sobic003G019200 Sobic003G019200 Sobic003G429300--Sobic003G019200 Sobic002G195900 Sobic002G195900 Sobic003G429300--Sobic002G195900 Sobic006G228300 Sobic006G228300 Sobic003G429300--Sobic006G228300 Sobic010G200700 Sobic010G200700 Sobic003G429300--Sobic010G200700 Sobic002G359300 Sobic002G359300 Sobic003G429300--Sobic002G359300 Sobic009G177800--Sobic002G183200 Sobic004G307000 Sobic004G307000 Sobic009G177800--Sobic004G307000 Sobic009G177800--Sobic008G111100 Sobic009G177800--Sobic001G119100 Sobic009G177800--Sobic002G195900 Sobic009G177800--Sobic001G119000 Sobic006G173900 Sobic006G173900 Sobic009G177800--Sobic006G173900 Sobic004G167800 Sobic004G167800 Sobic009G177800--Sobic004G167800 Sobic009G177800--Sobic007G171000 Sobic001G119000--Sobic001G119100 Sobic001G119000--Sobic005G091500 Sobic001G119000--Sobic002G183200 Sobic002G245100 Sobic002G245100 Sobic001G119000--Sobic002G245100 Sobic001G252300 Sobic001G252300 Sobic001G119000--Sobic001G252300 Sobic002G055600 Sobic002G055600 Sobic001G119000--Sobic002G055600 Sobic001G119000--Sobic004G189400 Sobic004G166700 Sobic004G166700 Sobic001G119000--Sobic004G166700 Sobic001G389000 Sobic001G389000 Sobic001G119000--Sobic001G389000 Sobic008G111100--Sobic009G177800 Sobic008G111100--Sobic003G429300 Sobic008G111100--Sobic004G307000 Sobic008G111100--Sobic003G019200 Sobic009G155200 Sobic009G155200 Sobic008G111100--Sobic009G155200 Sobic008G111100--Sobic007G171000 Sobic008G111100--Sobic002G195900 Sobic010G224200 Sobic010G224200 Sobic008G111100--Sobic010G224200 Sobic002G423300 Sobic002G423300 Sobic008G111100--Sobic002G423300 Sobic009G033700 Sobic009G033700 Sobic007G198100--Sobic009G033700 Sobic010G086200 Sobic010G086200 Sobic007G198100--Sobic010G086200 Sobic002G356101 Sobic002G356101 Sobic007G198100--Sobic002G356101 Sobic009G200700 Sobic009G200700 Sobic007G198100--Sobic009G200700 Sobic003G037800 Sobic003G037800 Sobic007G198100--Sobic003G037800 Sobic007G198100--Sobic003G019200 Sobic001G281400 Sobic001G281400 Sobic007G198100--Sobic001G281400 Sobic009G143400 Sobic009G143400 Sobic007G198100--Sobic009G143400 Sobic010G213400 Sobic010G213400 Sobic007G198100--Sobic010G213400 Sobic003G249800 Sobic003G249800 Sobic002G211900--Sobic003G249800 Sobic002G211900--Sobic001G015100 Sobic003G181500 Sobic003G181500 Sobic002G211900--Sobic003G181500 Sobic004G177700 Sobic004G177700 Sobic002G211900--Sobic004G177700 Sobic002G046100 Sobic002G046100 Sobic002G211900--Sobic002G046100 Sobic001G477300 Sobic001G477300 Sobic002G211900--Sobic001G477300 Sobic002G312400 Sobic002G312400 Sobic002G211900--Sobic002G312400 Sobic001G095300 Sobic001G095300 Sobic002G211900--Sobic001G095300 Sobic001G308300 Sobic001G308300 Sobic002G211900--Sobic001G308300
Octagon: transcription factors


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