Gene annotation
Transcriptome id Sobic.002G211900.1
Synonym Sb02g025520, AIP2
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XDL3
Pfam PF13639
Panther DB PTHR22763 PTHR22763:SF50
NCBI CDD -
KEGG Orthology K16274; E3 ubiquitin-protein ligase AIP2
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G20910 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os09g26400.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a013958
Brachypodium KQJ90356
Barley HORVU6Hr1G042090.4 , HORVU6Hr1G042090.1 , HORVU6Hr1G042090.3 , HORVU6Hr1G042090.2 , HORVU5Hr1G062970.3 , HORVU5Hr1G062970.2 , HORVU5Hr1G062970.1
Wheat TraesCS5B02G214500 , TraesCS5B02G214500 , TraesCS5A02G216000 , TraesCS5A02G216000 , TraesCS5D02G223800
Populus -


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cDNA sequences
Sobic.002G211900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
2 Sobic.001G015100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
3 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
4 Sobic.004G177700 AIG1, putative, expressed -
5 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
6 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -
7 Sobic.002G312400 domain of unknown function domain containing protein, expressed -
8 Sobic.001G095300 prenylated rab acceptor, putative, expressed -
9 Sobic.001G308300 expressed protein -
10 Sobic.004G061200 expressed protein -
11 Sobic.006G173900 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
12 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
13 Sobic.010G086200 GRAM domain containing protein, expressed -
14 Sobic.010G223600 ubiquitin family protein, putative, expressed K08770: ubiquitin C
15 Sobic.009G036000 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
16 Sobic.001G499300 high-affinity nickel-transport family protein, putative, expressed -
17 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
18 Sobic.002G393000 pyrrolidone-carboxylate peptidase, putative, expressed K01304: pyroglutamyl-peptidase
19 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
20 Sobic.001G124600 - -


Gene co-expression network
sample Sobic002G211900 Sobic002G211900 Sobic003G249800 Sobic003G249800 Sobic002G211900--Sobic003G249800 Sobic001G015100 Sobic001G015100 Sobic002G211900--Sobic001G015100 Sobic003G181500 Sobic003G181500 Sobic002G211900--Sobic003G181500 Sobic004G177700 Sobic004G177700 Sobic002G211900--Sobic004G177700 Sobic002G046100 Sobic002G046100 Sobic002G211900--Sobic002G046100 Sobic001G477300 Sobic001G477300 Sobic002G211900--Sobic001G477300 Sobic002G312400 Sobic002G312400 Sobic002G211900--Sobic002G312400 Sobic001G095300 Sobic001G095300 Sobic002G211900--Sobic001G095300 Sobic001G308300 Sobic001G308300 Sobic002G211900--Sobic001G308300 Sobic008G161000 Sobic008G161000 Sobic003G249800--Sobic008G161000 Sobic001G037000 Sobic001G037000 Sobic003G249800--Sobic001G037000 Sobic009G033700 Sobic009G033700 Sobic003G249800--Sobic009G033700 Sobic003G249800--Sobic002G046100 Sobic002G282400 Sobic002G282400 Sobic003G249800--Sobic002G282400 Sobic002G330000 Sobic002G330000 Sobic003G249800--Sobic002G330000 Sobic009G143400 Sobic009G143400 Sobic003G249800--Sobic009G143400 Sobic003G249800--Sobic002G211900 Sobic003G249800--Sobic003G181500 Sobic002G140400 Sobic002G140400 Sobic001G015100--Sobic002G140400 Sobic004G187900 Sobic004G187900 Sobic001G015100--Sobic004G187900 Sobic003G430400 Sobic003G430400 Sobic001G015100--Sobic003G430400 Sobic007G155200 Sobic007G155200 Sobic001G015100--Sobic007G155200 Sobic001G124600 Sobic001G124600 Sobic001G015100--Sobic001G124600 Sobic001G423800 Sobic001G423800 Sobic001G015100--Sobic001G423800 Sobic010G238600 Sobic010G238600 Sobic001G015100--Sobic010G238600 Sobic001G038900 Sobic001G038900 Sobic001G015100--Sobic001G038900 Sobic001G015100--Sobic002G211900 Sobic003G181500--Sobic004G187900 Sobic003G350300 Sobic003G350300 Sobic003G181500--Sobic003G350300 Sobic010G149300 Sobic010G149300 Sobic003G181500--Sobic010G149300 Sobic003G181500--Sobic003G249800 Sobic001G288800 Sobic001G288800 Sobic003G181500--Sobic001G288800 Sobic001G281400 Sobic001G281400 Sobic003G181500--Sobic001G281400 Sobic009G023200 Sobic009G023200 Sobic003G181500--Sobic009G023200 Sobic003G181500--Sobic002G211900 Sobic003G181500--Sobic002G046100 Sobic006G173900 Sobic006G173900 Sobic004G177700--Sobic006G173900 Sobic002G393000 Sobic002G393000 Sobic004G177700--Sobic002G393000 Sobic006G275200 Sobic006G275200 Sobic004G177700--Sobic006G275200 Sobic010G099900 Sobic010G099900 Sobic004G177700--Sobic010G099900 Sobic009G008900 Sobic009G008900 Sobic004G177700--Sobic009G008900 Sobic010G086200 Sobic010G086200 Sobic004G177700--Sobic010G086200 Sobic004G177700--Sobic010G149300 Sobic006G230500 Sobic006G230500 Sobic004G177700--Sobic006G230500 Sobic002G414600 Sobic002G414600 Sobic004G177700--Sobic002G414600 Sobic003G285800 Sobic003G285800 Sobic002G046100--Sobic003G285800 Sobic002G046100--Sobic001G281400 Sobic002G345300 Sobic002G345300 Sobic002G046100--Sobic002G345300 Sobic002G187500 Sobic002G187500 Sobic002G046100--Sobic002G187500 Sobic002G046100--Sobic010G086200 Sobic004G061200 Sobic004G061200 Sobic002G046100--Sobic004G061200 Sobic002G046100--Sobic001G477300 Sobic002G267500 Sobic002G267500 Sobic002G046100--Sobic002G267500 Sobic002G190900 Sobic002G190900 Sobic002G046100--Sobic002G190900 Sobic001G477300--Sobic001G124600 Sobic001G477300--Sobic004G187900 Sobic001G477300--Sobic002G046100 Sobic001G477300--Sobic001G308300 Sobic001G477300--Sobic010G086200 Sobic006G267200 Sobic006G267200 Sobic001G477300--Sobic006G267200 Sobic009G129000 Sobic009G129000 Sobic001G477300--Sobic009G129000 Sobic009G159400 Sobic009G159400 Sobic001G477300--Sobic009G159400 Sobic004G065500 Sobic004G065500 Sobic001G477300--Sobic004G065500 Sobic002G312400--Sobic001G281400 Sobic001G499300 Sobic001G499300 Sobic002G312400--Sobic001G499300 Sobic002G312400--Sobic004G187900 Sobic004G332900 Sobic004G332900 Sobic002G312400--Sobic004G332900 Sobic002G312400--Sobic002G211900 Sobic002G312400--Sobic006G173900 Sobic002G082600 Sobic002G082600 Sobic002G312400--Sobic002G082600 Sobic002G312400--Sobic009G023200 Sobic002G312400--Sobic004G177700 Sobic010G204600 Sobic010G204600 Sobic001G095300--Sobic010G204600 Sobic002G140300 Sobic002G140300 Sobic001G095300--Sobic002G140300 Sobic003G092900 Sobic003G092900 Sobic001G095300--Sobic003G092900 Sobic003G324400 Sobic003G324400 Sobic001G095300--Sobic003G324400 Sobic002G405600 Sobic002G405600 Sobic001G095300--Sobic002G405600 Sobic001G538866 Sobic001G538866 Sobic001G095300--Sobic001G538866 Sobic002G245800 Sobic002G245800 Sobic001G095300--Sobic002G245800 Sobic001G095300--Sobic009G129000 Sobic006G179500 Sobic006G179500 Sobic001G095300--Sobic006G179500 Sobic001G308300--Sobic002G140400 Sobic003G369100 Sobic003G369100 Sobic001G308300--Sobic003G369100 Sobic004G141200 Sobic004G141200 Sobic001G308300--Sobic004G141200 Sobic001G108200 Sobic001G108200 Sobic001G308300--Sobic001G108200 Sobic007G074000 Sobic007G074000 Sobic001G308300--Sobic007G074000 Sobic001G387900 Sobic001G387900 Sobic001G308300--Sobic001G387900 Sobic001G308300--Sobic001G038900 Sobic003G364600 Sobic003G364600 Sobic001G308300--Sobic003G364600 Sobic006G158600 Sobic006G158600 Sobic001G308300--Sobic006G158600
Octagon: transcription factors


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