Gene annotation
Transcriptome id Sobic.002G140400.1
Synonym UCC1, Sb02g012920
Functional annotation plastocyanin-like domain containing protein, putative, expressed
UniProt C5X6P7
Pfam PF02298
Panther DB PTHR33021 PTHR33021:SF69
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009055; electron transfer activity


Orthologs (automatic annotation)
TAIR AT2G32300 : uclacyanin 1
RAP-DB (Rice) LOC_Os09g39940.1 : plastocyanin-like domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a046019 , Zm00025a046017
Brachypodium KQJ94206 , KQJ94208
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G140400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
2 Sobic.002G263400 expressed protein -
3 Sobic.004G189400 expressed protein -
4 Sobic.001G423800 DNA binding protein, putative, expressed -
5 Sobic.008G136400 expressed protein -
6 Sobic.007G074000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- -
7 Sobic.004G237800 glycosyl transferase 8 domain containing protein, putative, expressed -
8 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
9 Sobic.003G286600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
10 Sobic.001G308300 expressed protein -
11 Sobic.003G369100 AP2 domain containing protein, expressed -
12 Sobic.006G158600 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
13 Sobic.004G243100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
14 Sobic.001G435000 gibberellin receptor GID1L2, putative, expressed -
15 Sobic.010G176600 - -
16 Sobic.002G192000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AN1-like zinc finger domain containing protein, expressed -
17 Sobic.005G063100 expressed protein -
18 Sobic.001G140900 helix-loop-helix DNA-binding protein, putative, expressed -
19 Sobic.002G336600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
20 Sobic.004G208700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CHIT1 - Chitinase family protein precursor, expressed K01183: chitinase


Gene co-expression network
sample Sobic002G140400 Sobic002G140400 Sobic001G038900 Sobic001G038900 Sobic002G140400--Sobic001G038900 Sobic002G263400 Sobic002G263400 Sobic002G140400--Sobic002G263400 Sobic004G189400 Sobic004G189400 Sobic002G140400--Sobic004G189400 Sobic001G423800 Sobic001G423800 Sobic002G140400--Sobic001G423800 Sobic008G136400 Sobic008G136400 Sobic002G140400--Sobic008G136400 Sobic007G074000 Sobic007G074000 Sobic002G140400--Sobic007G074000 Sobic004G237800 Sobic004G237800 Sobic002G140400--Sobic004G237800 Sobic008G050600 Sobic008G050600 Sobic002G140400--Sobic008G050600 Sobic003G286600 Sobic003G286600 Sobic002G140400--Sobic003G286600 Sobic001G038900--Sobic002G140400 Sobic001G140900 Sobic001G140900 Sobic001G038900--Sobic001G140900 Sobic001G038900--Sobic008G136400 Sobic001G038900--Sobic008G050600 Sobic001G038900--Sobic001G423800 Sobic009G159400 Sobic009G159400 Sobic001G038900--Sobic009G159400 Sobic003G345100 Sobic003G345100 Sobic001G038900--Sobic003G345100 Sobic001G367600 Sobic001G367600 Sobic001G038900--Sobic001G367600 Sobic001G038900--Sobic004G189400 Sobic002G263400--Sobic002G140400 Sobic002G263400--Sobic004G189400 Sobic003G282901 Sobic003G282901 Sobic002G263400--Sobic003G282901 Sobic004G243100 Sobic004G243100 Sobic002G263400--Sobic004G243100 Sobic001G018300 Sobic001G018300 Sobic002G263400--Sobic001G018300 Sobic002G263400--Sobic001G423800 Sobic002G192000 Sobic002G192000 Sobic002G263400--Sobic002G192000 Sobic001G231400 Sobic001G231400 Sobic002G263400--Sobic001G231400 Sobic003G322900 Sobic003G322900 Sobic002G263400--Sobic003G322900 Sobic004G189400--Sobic002G140400 Sobic005G091500 Sobic005G091500 Sobic004G189400--Sobic005G091500 Sobic004G189400--Sobic002G263400 Sobic004G189400--Sobic008G050600 Sobic004G189400--Sobic004G237800 Sobic003G382600 Sobic003G382600 Sobic004G189400--Sobic003G382600 Sobic006G099900 Sobic006G099900 Sobic004G189400--Sobic006G099900 Sobic004G189400--Sobic008G136400 Sobic005G029200 Sobic005G029200 Sobic004G189400--Sobic005G029200 Sobic001G423800--Sobic004G243100 Sobic001G423800--Sobic002G140400 Sobic001G423800--Sobic001G038900 Sobic001G119400 Sobic001G119400 Sobic001G423800--Sobic001G119400 Sobic001G423800--Sobic001G018300 Sobic007G155100 Sobic007G155100 Sobic001G423800--Sobic007G155100 Sobic001G423800--Sobic008G136400 Sobic002G393000 Sobic002G393000 Sobic001G423800--Sobic002G393000 Sobic001G423800--Sobic004G189400 Sobic008G136400--Sobic001G038900 Sobic008G136400--Sobic008G050600 Sobic008G136400--Sobic002G140400 Sobic006G275200 Sobic006G275200 Sobic008G136400--Sobic006G275200 Sobic008G136400--Sobic001G140900 Sobic006G158600 Sobic006G158600 Sobic008G136400--Sobic006G158600 Sobic008G136400--Sobic004G189400 Sobic008G136400--Sobic001G423800 Sobic009G008900 Sobic009G008900 Sobic008G136400--Sobic009G008900 Sobic003G369100 Sobic003G369100 Sobic007G074000--Sobic003G369100 Sobic004G141200 Sobic004G141200 Sobic007G074000--Sobic004G141200 Sobic007G074000--Sobic004G237800 Sobic007G074000--Sobic002G140400 Sobic003G228900 Sobic003G228900 Sobic007G074000--Sobic003G228900 Sobic002G336600 Sobic002G336600 Sobic007G074000--Sobic002G336600 Sobic003G364600 Sobic003G364600 Sobic007G074000--Sobic003G364600 Sobic001G138600 Sobic001G138600 Sobic007G074000--Sobic001G138600 Sobic009G247900 Sobic009G247900 Sobic007G074000--Sobic009G247900 Sobic004G237800--Sobic007G074000 Sobic004G321300 Sobic004G321300 Sobic004G237800--Sobic004G321300 Sobic004G237800--Sobic002G336600 Sobic004G237800--Sobic004G189400 Sobic002G055700 Sobic002G055700 Sobic004G237800--Sobic002G055700 Sobic004G237800--Sobic002G140400 Sobic004G237800--Sobic005G091500 Sobic001G112200 Sobic001G112200 Sobic004G237800--Sobic001G112200 Sobic005G063100 Sobic005G063100 Sobic004G237800--Sobic005G063100 Sobic008G050600--Sobic003G345100 Sobic008G050600--Sobic001G140900 Sobic008G050600--Sobic005G063100 Sobic008G050600--Sobic003G286600 Sobic009G164600 Sobic009G164600 Sobic008G050600--Sobic009G164600 Sobic008G050600--Sobic001G038900 Sobic008G050600--Sobic008G136400 Sobic008G050600--Sobic004G189400 Sobic005G051200 Sobic005G051200 Sobic008G050600--Sobic005G051200 Sobic010G176600 Sobic010G176600 Sobic003G286600--Sobic010G176600 Sobic003G286600--Sobic008G050600 Sobic003G286600--Sobic005G063100 Sobic003G286600--Sobic006G099900 Sobic004G208700 Sobic004G208700 Sobic003G286600--Sobic004G208700 Sobic003G286600--Sobic002G140400 Sobic003G286600--Sobic003G345100 Sobic003G317100 Sobic003G317100 Sobic003G286600--Sobic003G317100 Sobic003G286600--Sobic009G164600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.