Gene annotation
Transcriptome id Sobic.002G393000.1
Synonym Sb02g040830
Functional annotation pyrrolidone-carboxylate peptidase, putative, expressed
UniProt C5X3D7
Pfam PF01470
Panther DB PTHR23402 PTHR23402:SF17
NCBI CDD KOG4755; Predicted pyroglutamyl peptidase
KEGG Orthology K01304; pyroglutamyl-peptidase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G56700 : Peptidase C15, pyroglutamyl peptidase I-like
RAP-DB (Rice) LOC_Os07g44610.2 : pyrrolidone-carboxylate peptidase, putative, expressed
MaizeGDB (Corn) Zm00025a048937
Brachypodium KQK14987 , KQK14986
Barley -
Wheat TraesCS2B02G172900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G393000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
2 Sobic.006G275200 CHCH domain containing protein, expressed -
3 Sobic.006G173900 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
4 Sobic.001G423800 DNA binding protein, putative, expressed -
5 Sobic.009G008900 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
6 Sobic.008G136400 expressed protein -
7 Sobic.010G099900 expressed protein -
8 Sobic.002G414600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hypoxia-responsive family protein, putative, expressed -
9 Sobic.009G183400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
10 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
11 Sobic.010G176600 - -
12 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
13 Sobic.004G216600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsGrx_C2.1 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
14 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.003G286600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
16 Sobic.003G078100 B3 DNA binding domain containing protein, expressed -
17 Sobic.003G393700 zinc finger, RING-type, putative, expressed -
18 Sobic.004G061200 expressed protein -
19 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
20 Sobic.009G070400 expressed protein -


Gene co-expression network
sample Sobic002G393000 Sobic002G393000 Sobic001G119400 Sobic001G119400 Sobic002G393000--Sobic001G119400 Sobic006G275200 Sobic006G275200 Sobic002G393000--Sobic006G275200 Sobic006G173900 Sobic006G173900 Sobic002G393000--Sobic006G173900 Sobic001G423800 Sobic001G423800 Sobic002G393000--Sobic001G423800 Sobic009G008900 Sobic009G008900 Sobic002G393000--Sobic009G008900 Sobic008G136400 Sobic008G136400 Sobic002G393000--Sobic008G136400 Sobic010G099900 Sobic010G099900 Sobic002G393000--Sobic010G099900 Sobic002G414600 Sobic002G414600 Sobic002G393000--Sobic002G414600 Sobic009G183400 Sobic009G183400 Sobic002G393000--Sobic009G183400 Sobic001G119400--Sobic009G183400 Sobic001G119400--Sobic001G423800 Sobic001G119400--Sobic002G393000 Sobic001G119400--Sobic009G008900 Sobic009G139400 Sobic009G139400 Sobic001G119400--Sobic009G139400 Sobic001G038900 Sobic001G038900 Sobic001G119400--Sobic001G038900 Sobic001G119400--Sobic006G275200 Sobic006G099900 Sobic006G099900 Sobic001G119400--Sobic006G099900 Sobic003G417800 Sobic003G417800 Sobic001G119400--Sobic003G417800 Sobic006G275200--Sobic008G136400 Sobic006G275200--Sobic002G393000 Sobic006G275200--Sobic009G008900 Sobic006G275200--Sobic006G173900 Sobic001G097600 Sobic001G097600 Sobic006G275200--Sobic001G097600 Sobic006G275200--Sobic001G119400 Sobic003G367200 Sobic003G367200 Sobic006G275200--Sobic003G367200 Sobic001G317000 Sobic001G317000 Sobic006G275200--Sobic001G317000 Sobic006G275200--Sobic001G038900 Sobic006G173900--Sobic009G008900 Sobic006G173900--Sobic010G099900 Sobic006G173900--Sobic002G393000 Sobic006G173900--Sobic006G275200 Sobic006G173900--Sobic008G136400 Sobic006G173900--Sobic002G414600 Sobic006G173900--Sobic001G119400 Sobic006G173900--Sobic001G423800 Sobic004G177700 Sobic004G177700 Sobic006G173900--Sobic004G177700 Sobic004G243100 Sobic004G243100 Sobic001G423800--Sobic004G243100 Sobic002G140400 Sobic002G140400 Sobic001G423800--Sobic002G140400 Sobic001G423800--Sobic001G038900 Sobic001G423800--Sobic001G119400 Sobic001G018300 Sobic001G018300 Sobic001G423800--Sobic001G018300 Sobic007G155100 Sobic007G155100 Sobic001G423800--Sobic007G155100 Sobic001G423800--Sobic008G136400 Sobic001G423800--Sobic002G393000 Sobic004G189400 Sobic004G189400 Sobic001G423800--Sobic004G189400 Sobic009G008900--Sobic006G173900 Sobic009G008900--Sobic001G119400 Sobic009G008900--Sobic006G275200 Sobic009G008900--Sobic002G393000 Sobic009G008900--Sobic008G136400 Sobic009G008900--Sobic001G423800 Sobic001G177800 Sobic001G177800 Sobic009G008900--Sobic001G177800 Sobic009G008900--Sobic002G414600 Sobic009G008900--Sobic001G038900 Sobic008G136400--Sobic001G038900 Sobic008G050600 Sobic008G050600 Sobic008G136400--Sobic008G050600 Sobic008G136400--Sobic002G140400 Sobic008G136400--Sobic006G275200 Sobic001G140900 Sobic001G140900 Sobic008G136400--Sobic001G140900 Sobic006G158600 Sobic006G158600 Sobic008G136400--Sobic006G158600 Sobic008G136400--Sobic004G189400 Sobic008G136400--Sobic001G423800 Sobic008G136400--Sobic009G008900 Sobic010G099900--Sobic006G173900 Sobic010G099900--Sobic002G393000 Sobic010G099900--Sobic006G275200 Sobic010G099900--Sobic009G008900 Sobic010G099900--Sobic001G119400 Sobic006G127900 Sobic006G127900 Sobic010G099900--Sobic006G127900 Sobic010G099900--Sobic008G136400 Sobic010G099900--Sobic002G414600 Sobic004G216600 Sobic004G216600 Sobic010G099900--Sobic004G216600 Sobic001G252300 Sobic001G252300 Sobic002G414600--Sobic001G252300 Sobic002G414600--Sobic009G183400 Sobic002G414600--Sobic001G097600 Sobic002G414600--Sobic002G393000 Sobic002G414600--Sobic001G119400 Sobic002G414600--Sobic009G008900 Sobic005G051200 Sobic005G051200 Sobic002G414600--Sobic005G051200 Sobic002G414600--Sobic006G173900 Sobic002G414600--Sobic006G275200 Sobic001G476500 Sobic001G476500 Sobic009G183400--Sobic001G476500 Sobic009G183400--Sobic001G119400 Sobic006G092500 Sobic006G092500 Sobic009G183400--Sobic006G092500 Sobic009G183400--Sobic001G038900 Sobic009G183400--Sobic001G097600 Sobic009G061200 Sobic009G061200 Sobic009G183400--Sobic009G061200 Sobic009G183400--Sobic002G414600 Sobic004G100700 Sobic004G100700 Sobic009G183400--Sobic004G100700 Sobic009G183400--Sobic001G140900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.