Gene annotation
Transcriptome id Sobic.003G181500.1
Synonym Sb03g023980
Functional annotation ZOS1-09 - C2H2 zinc finger protein, expressed
UniProt C5XMV3
Pfam PF03152
Panther DB PTHR12555 PTHR12555:SF14
NCBI CDD KOG1816; Ubiquitin fusion-degradation protein
KEGG Orthology -
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process


Orthologs (automatic annotation)
TAIR AT4G15420 : Ubiquitin fusion degradation UFD1 family protein
RAP-DB (Rice) LOC_Os01g35040.1 : ZOS1-09 - C2H2 zinc finger protein, expressed
MaizeGDB (Corn) Zm00025a036401
Brachypodium PNT72156 , KQK08206 , KQK08205
Barley HORVU3Hr1G045960.1 , HORVU3Hr1G045960.3 , HORVU3Hr1G045960.2 , HORVU3Hr1G045960.4
Wheat TraesCS3A02G199600 , TraesCS3A02G199600 , TraesCSU02G127800 , TraesCS1B02G268600 , TraesCS3D02G201900 , TraesCS3B02G229900
Populus -


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cDNA sequences
Sobic.003G181500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
2 Sobic.003G350300 ubiquitin-conjugating enzyme, putative, expressed K10575: UBE2G1, ubiquitin-conjugating enzyme E2 G1
3 Sobic.010G149300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
4 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
5 Sobic.001G288800 nonsense-mediated mRNA decay protein 3, putative, expressed K07562: nonsense-mediated mRNA decay protein 3
6 Sobic.001G281400 expressed protein -
7 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
8 Sobic.002G211900 zinc finger, C3HC4 type domain containing protein, expressed K16274: E3 ubiquitin-protein ligase AIP2
9 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
10 Sobic.001G459200 MYB family transcription factor, putative, expressed -
11 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
12 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
13 Sobic.010G223600 ubiquitin family protein, putative, expressed K08770: ubiquitin C
14 Sobic.010G086200 GRAM domain containing protein, expressed -
15 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
16 Sobic.002G345300 ZOS7-05 - C2H2 zinc finger protein, expressed -
17 Sobic.002G282400 expressed protein -
18 Sobic.001G124600 - -
19 Sobic.001G037000 PHD finger protein, putative, expressed -
20 Sobic.009G033700 protein kinase, putative, expressed K13436: pto-interacting protein 1


Gene co-expression network
sample Sobic003G181500 Sobic003G181500 Sobic004G187900 Sobic004G187900 Sobic003G181500--Sobic004G187900 Sobic003G350300 Sobic003G350300 Sobic003G181500--Sobic003G350300 Sobic010G149300 Sobic010G149300 Sobic003G181500--Sobic010G149300 Sobic003G249800 Sobic003G249800 Sobic003G181500--Sobic003G249800 Sobic001G288800 Sobic001G288800 Sobic003G181500--Sobic001G288800 Sobic001G281400 Sobic001G281400 Sobic003G181500--Sobic001G281400 Sobic009G023200 Sobic009G023200 Sobic003G181500--Sobic009G023200 Sobic002G211900 Sobic002G211900 Sobic003G181500--Sobic002G211900 Sobic002G046100 Sobic002G046100 Sobic003G181500--Sobic002G046100 Sobic004G187900--Sobic001G281400 Sobic001G124600 Sobic001G124600 Sobic004G187900--Sobic001G124600 Sobic002G140400 Sobic002G140400 Sobic004G187900--Sobic002G140400 Sobic009G141800 Sobic009G141800 Sobic004G187900--Sobic009G141800 Sobic004G321300 Sobic004G321300 Sobic004G187900--Sobic004G321300 Sobic004G187900--Sobic003G350300 Sobic009G008900 Sobic009G008900 Sobic004G187900--Sobic009G008900 Sobic001G477300 Sobic001G477300 Sobic004G187900--Sobic001G477300 Sobic008G136400 Sobic008G136400 Sobic004G187900--Sobic008G136400 Sobic003G350300--Sobic004G187900 Sobic002G345300 Sobic002G345300 Sobic003G350300--Sobic002G345300 Sobic003G350300--Sobic002G046100 Sobic003G285800 Sobic003G285800 Sobic003G350300--Sobic003G285800 Sobic003G350300--Sobic001G281400 Sobic003G350300--Sobic004G321300 Sobic010G274900 Sobic010G274900 Sobic003G350300--Sobic010G274900 Sobic010G086200 Sobic010G086200 Sobic003G350300--Sobic010G086200 Sobic003G350300--Sobic003G181500 Sobic010G149300--Sobic001G281400 Sobic010G149300--Sobic010G086200 Sobic002G267500 Sobic002G267500 Sobic010G149300--Sobic002G267500 Sobic009G143400 Sobic009G143400 Sobic010G149300--Sobic009G143400 Sobic010G149300--Sobic003G181500 Sobic010G149300--Sobic002G046100 Sobic004G177700 Sobic004G177700 Sobic010G149300--Sobic004G177700 Sobic010G149300--Sobic002G345300 Sobic009G129000 Sobic009G129000 Sobic010G149300--Sobic009G129000 Sobic008G161000 Sobic008G161000 Sobic003G249800--Sobic008G161000 Sobic001G037000 Sobic001G037000 Sobic003G249800--Sobic001G037000 Sobic009G033700 Sobic009G033700 Sobic003G249800--Sobic009G033700 Sobic003G249800--Sobic002G046100 Sobic002G282400 Sobic002G282400 Sobic003G249800--Sobic002G282400 Sobic002G330000 Sobic002G330000 Sobic003G249800--Sobic002G330000 Sobic003G249800--Sobic009G143400 Sobic003G249800--Sobic002G211900 Sobic003G249800--Sobic003G181500 Sobic001G288800--Sobic003G181500 Sobic010G150575 Sobic010G150575 Sobic001G288800--Sobic010G150575 Sobic001G288800--Sobic001G281400 Sobic001G288800--Sobic003G350300 Sobic001G177800 Sobic001G177800 Sobic001G288800--Sobic001G177800 Sobic010G243200 Sobic010G243200 Sobic001G288800--Sobic010G243200 Sobic003G321700 Sobic003G321700 Sobic001G288800--Sobic003G321700 Sobic001G288800--Sobic004G187900 Sobic006G173900 Sobic006G173900 Sobic001G288800--Sobic006G173900 Sobic001G281400--Sobic004G187900 Sobic001G281400--Sobic002G267500 Sobic001G281400--Sobic010G149300 Sobic002G190900 Sobic002G190900 Sobic001G281400--Sobic002G190900 Sobic001G281400--Sobic002G046100 Sobic001G281400--Sobic010G086200 Sobic001G281400--Sobic009G141800 Sobic001G281400--Sobic009G008900 Sobic001G499300 Sobic001G499300 Sobic001G281400--Sobic001G499300 Sobic009G023200--Sobic004G187900 Sobic010G204600 Sobic010G204600 Sobic009G023200--Sobic010G204600 Sobic003G063200 Sobic003G063200 Sobic009G023200--Sobic003G063200 Sobic001G067601 Sobic001G067601 Sobic009G023200--Sobic001G067601 Sobic009G023200--Sobic002G046100 Sobic002G245800 Sobic002G245800 Sobic009G023200--Sobic002G245800 Sobic009G023200--Sobic003G181500 Sobic003G202200 Sobic003G202200 Sobic009G023200--Sobic003G202200 Sobic005G196800 Sobic005G196800 Sobic009G023200--Sobic005G196800 Sobic002G211900--Sobic003G249800 Sobic001G015100 Sobic001G015100 Sobic002G211900--Sobic001G015100 Sobic002G211900--Sobic003G181500 Sobic002G211900--Sobic004G177700 Sobic002G211900--Sobic002G046100 Sobic002G211900--Sobic001G477300 Sobic002G312400 Sobic002G312400 Sobic002G211900--Sobic002G312400 Sobic001G095300 Sobic001G095300 Sobic002G211900--Sobic001G095300 Sobic001G308300 Sobic001G308300 Sobic002G211900--Sobic001G308300 Sobic002G046100--Sobic003G285800 Sobic002G046100--Sobic001G281400 Sobic002G046100--Sobic002G345300 Sobic002G187500 Sobic002G187500 Sobic002G046100--Sobic002G187500 Sobic002G046100--Sobic010G086200 Sobic004G061200 Sobic004G061200 Sobic002G046100--Sobic004G061200 Sobic002G046100--Sobic001G477300 Sobic002G046100--Sobic002G267500 Sobic002G046100--Sobic002G190900
Octagon: transcription factors


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