Gene annotation
Transcriptome id Sobic.003G130800.1
Synonym Sb03g011130
Functional annotation pyruvate kinase, putative, expressed
UniProt C5XH93
Pfam PF02887 PF00224
Panther DB PTHR11817 PTHR11817:SF5
NCBI CDD -
KEGG Orthology K00873; PK, pyruvate kinase
Gene Ontology GO:0006096; glycolytic process GO:0004743pyruvate kinase activity GO:0000287magnesium ion binding


Orthologs (automatic annotation)
TAIR AT5G56350 : Pyruvate kinase family protein
RAP-DB (Rice) LOC_Os01g16960.1 : pyruvate kinase, putative, expressed
MaizeGDB (Corn) Zm00025a057383 , Zm00025a024134 , Zm00025a009293
Brachypodium KQJ85283 , PNT70339 , KQK21884 , KQK03897
Barley HORVU3Hr1G039230.2 , HORVU3Hr1G039230.3 , HORVU3Hr1G039230.1 , HORVU2Hr1G119460.2 , HORVU2Hr1G119460.1 , HORVU3Hr1G039200.4 , HORVU3Hr1G039200.3 , HORVU3Hr1G039200.2 , HORVU3Hr1G039200.1
Wheat TraesCS3D02G192800 , TraesCS2B02G591300 , TraesCS3A02G189300 , TraesCS2A02G593000 , TraesCS2D02G561700 , TraesCS3B02G218500 , TraesCS3B02G218500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G185800 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
2 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
3 Sobic.001G459200 MYB family transcription factor, putative, expressed -
4 Sobic.006G180200 transmembrane amino acid transporter protein, putative, expressed K14209: SLC36A, solute carrier family 36 (proton-coupled amino acid transporter)
5 Sobic.002G345300 ZOS7-05 - C2H2 zinc finger protein, expressed -
6 Sobic.004G049900 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
7 Sobic.004G055200 phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
8 Sobic.010G135000 thioredoxin reductase 2, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
9 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
10 Sobic.001G281400 expressed protein -
11 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
12 Sobic.004G330700 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
13 Sobic.010G149300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
14 Sobic.008G033600 Pyruvate kinase family protein(PubMedID : 26465154)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
15 Sobic.003G136000 OsRhmbd3 - Putative Rhomboid homologue, expressed K09651: rhomboid domain-containing protein 1
16 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
17 Sobic.001G499300 high-affinity nickel-transport family protein, putative, expressed -
18 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
19 Sobic.003G350300 ubiquitin-conjugating enzyme, putative, expressed K10575: UBE2G1, ubiquitin-conjugating enzyme E2 G1
20 Sobic.009G023200 glycine-rich protein A3, putative, expressed -


Gene co-expression network
sample Sobic003G130800 Sobic003G130800 Sobic009G185800 Sobic009G185800 Sobic003G130800--Sobic009G185800 Sobic003G253000 Sobic003G253000 Sobic003G130800--Sobic003G253000 Sobic001G459200 Sobic001G459200 Sobic003G130800--Sobic001G459200 Sobic006G180200 Sobic006G180200 Sobic003G130800--Sobic006G180200 Sobic002G345300 Sobic002G345300 Sobic003G130800--Sobic002G345300 Sobic004G049900 Sobic004G049900 Sobic003G130800--Sobic004G049900 Sobic004G055200 Sobic004G055200 Sobic003G130800--Sobic004G055200 Sobic010G135000 Sobic010G135000 Sobic003G130800--Sobic010G135000 Sobic003G181500 Sobic003G181500 Sobic003G130800--Sobic003G181500 Sobic009G185800--Sobic001G459200 Sobic009G185800--Sobic004G049900 Sobic009G185800--Sobic003G253000 Sobic009G185800--Sobic003G130800 Sobic006G108400 Sobic006G108400 Sobic009G185800--Sobic006G108400 Sobic003G350300 Sobic003G350300 Sobic009G185800--Sobic003G350300 Sobic004G330700 Sobic004G330700 Sobic009G185800--Sobic004G330700 Sobic004G272800 Sobic004G272800 Sobic009G185800--Sobic004G272800 Sobic009G185800--Sobic003G181500 Sobic006G141500 Sobic006G141500 Sobic003G253000--Sobic006G141500 Sobic003G253000--Sobic004G049900 Sobic002G267500 Sobic002G267500 Sobic003G253000--Sobic002G267500 Sobic003G253000--Sobic004G272800 Sobic003G253000--Sobic001G459200 Sobic003G253000--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic003G253000--Sobic002G046100 Sobic003G253000--Sobic009G185800 Sobic003G253000--Sobic006G108400 Sobic001G459200--Sobic009G185800 Sobic001G459200--Sobic003G253000 Sobic001G499300 Sobic001G499300 Sobic001G459200--Sobic001G499300 Sobic001G459200--Sobic004G055200 Sobic001G459200--Sobic002G267500 Sobic001G459200--Sobic002G046100 Sobic001G459200--Sobic004G272800 Sobic001G459200--Sobic003G181500 Sobic001G459200--Sobic003G130800 Sobic006G180200--Sobic003G130800 Sobic006G180200--Sobic010G135000 Sobic006G180200--Sobic009G185800 Sobic006G180200--Sobic004G055200 Sobic001G131400 Sobic001G131400 Sobic006G180200--Sobic001G131400 Sobic008G033600 Sobic008G033600 Sobic006G180200--Sobic008G033600 Sobic004G187900 Sobic004G187900 Sobic006G180200--Sobic004G187900 Sobic006G180200--Sobic003G181500 Sobic008G189300 Sobic008G189300 Sobic006G180200--Sobic008G189300 Sobic002G345300--Sobic002G046100 Sobic002G345300--Sobic003G350300 Sobic001G281400 Sobic001G281400 Sobic002G345300--Sobic001G281400 Sobic010G178200 Sobic010G178200 Sobic002G345300--Sobic010G178200 Sobic002G345300--Sobic002G267500 Sobic002G345300--Sobic003G253000 Sobic003G285800 Sobic003G285800 Sobic002G345300--Sobic003G285800 Sobic002G345300--Sobic004G272800 Sobic010G149300 Sobic010G149300 Sobic002G345300--Sobic010G149300 Sobic004G049900--Sobic003G253000 Sobic004G049900--Sobic009G185800 Sobic004G049900--Sobic006G108400 Sobic004G049900--Sobic003G130800 Sobic004G049900--Sobic001G459200 Sobic004G050000 Sobic004G050000 Sobic004G049900--Sobic004G050000 Sobic001G415500 Sobic001G415500 Sobic004G049900--Sobic001G415500 Sobic004G049900--Sobic002G267500 Sobic004G049900--Sobic001G281400 Sobic004G055200--Sobic008G033600 Sobic004G055200--Sobic001G459200 Sobic004G055200--Sobic003G130800 Sobic004G055200--Sobic004G330700 Sobic004G055200--Sobic001G281400 Sobic004G055200--Sobic004G187900 Sobic004G055200--Sobic001G499300 Sobic001G477300 Sobic001G477300 Sobic004G055200--Sobic001G477300 Sobic007G051000 Sobic007G051000 Sobic004G055200--Sobic007G051000 Sobic010G135000--Sobic003G130800 Sobic010G135000--Sobic006G180200 Sobic010G135000--Sobic002G345300 Sobic010G135000--Sobic003G181500 Sobic010G135000--Sobic001G459200 Sobic009G023200 Sobic009G023200 Sobic010G135000--Sobic009G023200 Sobic010G135000--Sobic003G350300 Sobic010G135000--Sobic004G330700 Sobic010G135000--Sobic009G185800 Sobic003G181500--Sobic004G187900 Sobic003G181500--Sobic003G350300 Sobic003G181500--Sobic010G149300 Sobic003G249800 Sobic003G249800 Sobic003G181500--Sobic003G249800 Sobic001G288800 Sobic001G288800 Sobic003G181500--Sobic001G288800 Sobic003G181500--Sobic001G281400 Sobic003G181500--Sobic009G023200 Sobic002G211900 Sobic002G211900 Sobic003G181500--Sobic002G211900 Sobic003G181500--Sobic002G046100
Octagon: transcription factors


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