Gene annotation
Transcriptome id Sobic.004G144400.2,Sobic.004G144400.1
Synonym PHS1, Sb04g018500
Functional annotation riboflavin biosynthesis protein ribD, putative, expressed
UniProt A0A1Z5RMY6 , A0A1Z5RMJ9
Pfam PF08719 PF01872
Panther DB PTHR11079 PTHR11079:SF76
NCBI CDD KOG1018; Cytosine deaminase FCY1 and related enzymes
KEGG Orthology K11752; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
Gene Ontology GO:0009231; riboflavin biosynthetic process GO:00087035-amino-6-(5-phosphoribosylamino)uracil reductase activity


Orthologs (automatic annotation)
TAIR AT3G47390 : cytidine/deoxycytidylate deaminase family protein
RAP-DB (Rice) LOC_Os03g02600.1 : riboflavin biosynthesis protein ribD, putative, expressed
MaizeGDB (Corn) Zm00025a020313
Brachypodium KQJ99475 , KQJ99474 , KQJ99470 , KQJ99473 , KQJ99472 , KQJ99471 , PNT68624 , KQJ99468 , KQJ99469 , PNT68623 , KQJ99466 , KQJ99467 , KQJ99464 , KQJ99465
Barley HORVU6Hr1G091240.4 , HORVU6Hr1G091240.5 , HORVU6Hr1G091240.6 , HORVU6Hr1G091240.7 , HORVU6Hr1G091240.2 , HORVU6Hr1G091240.3 , HORVU6Hr1G091240.8 , HORVU6Hr1G091240.9 , HORVU6Hr1G091240.22 , HORVU6Hr1G091240.21 , HORVU6Hr1G091240.20 , HORVU6Hr1G091240.16 , HORVU6Hr1G091240.17 , HORVU6Hr1G091240.14 , HORVU6Hr1G091240.15 , HORVU6Hr1G091240.12 , HORVU6Hr1G091240.13 , HORVU6Hr1G091240.10 , HORVU6Hr1G091240.11 , HORVU6Hr1G091240.18 , HORVU6Hr1G091240.19
Wheat TraesCS6D02G378500 , TraesCS6A02G392800 , TraesCS6A02G392800 , TraesCS6B02G433000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G019500 pentatricopeptide, putative, expressed -
2 Sobic.008G067100 phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed K14153: hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase
3 Sobic.008G090900 expressed protein -
4 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
5 Sobic.002G181132 - -
6 Sobic.004G301200 kinesin motor domain containing protein, expressed K11498: centromeric protein E
7 Sobic.009G092900 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
8 Sobic.002G218500 lecithine cholesterol acyltransferase, putative, expressed K00679: phospholipid:diacylglycerol acyltransferase
9 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
10 Sobic.003G045300 cobalt ion transporter, putative, expressed -
11 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
12 Sobic.009G214200 phosphoribosylamine--glycine ligase, putative, expressed K01945: phosphoribosylamine---glycine ligase
13 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
14 Sobic.001G448600 GTP-binding protein, putative, expressed K03978: GTP-binding protein
15 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
16 Sobic.005G117300 ABC transporter, ATP-binding protein, putative, expressed -
17 Sobic.002G378000 amidase family protein, putative, expressed -
18 Sobic.002G431300 uncharacterized ACR, YagE family COG1723 containing protein, expressed -
19 Sobic.004G253100 armadillo/beta-catenin repeat family protein, putative, expressed -
20 Sobic.001G540800 DNA binding protein, putative, expressed -


Gene co-expression network
sample Sobic004G144400 Sobic004G144400 Sobic004G019500 Sobic004G019500 Sobic004G144400--Sobic004G019500 Sobic008G067100 Sobic008G067100 Sobic004G144400--Sobic008G067100 Sobic008G090900 Sobic008G090900 Sobic004G144400--Sobic008G090900 Sobic004G003900 Sobic004G003900 Sobic004G144400--Sobic004G003900 Sobic002G181132 Sobic002G181132 Sobic004G144400--Sobic002G181132 Sobic004G301200 Sobic004G301200 Sobic004G144400--Sobic004G301200 Sobic009G092900 Sobic009G092900 Sobic004G144400--Sobic009G092900 Sobic002G218500 Sobic002G218500 Sobic004G144400--Sobic002G218500 Sobic009G129100 Sobic009G129100 Sobic004G144400--Sobic009G129100 Sobic004G019500--Sobic004G144400 Sobic001G540800 Sobic001G540800 Sobic004G019500--Sobic001G540800 Sobic009G214200 Sobic009G214200 Sobic004G019500--Sobic009G214200 Sobic001G326300 Sobic001G326300 Sobic004G019500--Sobic001G326300 Sobic007G210000 Sobic007G210000 Sobic004G019500--Sobic007G210000 Sobic001G022500 Sobic001G022500 Sobic004G019500--Sobic001G022500 Sobic004G225600 Sobic004G225600 Sobic004G019500--Sobic004G225600 Sobic003G434700 Sobic003G434700 Sobic004G019500--Sobic003G434700 Sobic004G019500--Sobic004G003900 Sobic008G067100--Sobic008G090900 Sobic007G095500 Sobic007G095500 Sobic008G067100--Sobic007G095500 Sobic008G067100--Sobic004G144400 Sobic002G156100 Sobic002G156100 Sobic008G067100--Sobic002G156100 Sobic001G382800 Sobic001G382800 Sobic008G067100--Sobic001G382800 Sobic008G067100--Sobic004G003900 Sobic003G128400 Sobic003G128400 Sobic008G067100--Sobic003G128400 Sobic004G208600 Sobic004G208600 Sobic008G067100--Sobic004G208600 Sobic002G378000 Sobic002G378000 Sobic008G067100--Sobic002G378000 Sobic008G090900--Sobic004G003900 Sobic008G090900--Sobic009G092900 Sobic008G090900--Sobic002G181132 Sobic008G090900--Sobic001G382800 Sobic008G090900--Sobic008G067100 Sobic003G045300 Sobic003G045300 Sobic008G090900--Sobic003G045300 Sobic001G375000 Sobic001G375000 Sobic008G090900--Sobic001G375000 Sobic008G090900--Sobic003G128400 Sobic006G088000 Sobic006G088000 Sobic008G090900--Sobic006G088000 Sobic004G003900--Sobic001G375000 Sobic004G003900--Sobic008G090900 Sobic004G003900--Sobic003G128400 Sobic004G003900--Sobic009G092900 Sobic004G003900--Sobic002G181132 Sobic004G003900--Sobic003G045300 Sobic003G162800 Sobic003G162800 Sobic004G003900--Sobic003G162800 Sobic004G003900--Sobic006G088000 Sobic001G003900 Sobic001G003900 Sobic004G003900--Sobic001G003900 Sobic006G166500 Sobic006G166500 Sobic002G181132--Sobic006G166500 Sobic002G181132--Sobic003G045300 Sobic002G181132--Sobic004G003900 Sobic002G181132--Sobic001G375000 Sobic002G181132--Sobic003G162800 Sobic002G181132--Sobic008G090900 Sobic002G181132--Sobic009G092900 Sobic003G345900 Sobic003G345900 Sobic002G181132--Sobic003G345900 Sobic002G181132--Sobic002G156100 Sobic007G208300 Sobic007G208300 Sobic004G301200--Sobic007G208300 Sobic006G091300 Sobic006G091300 Sobic004G301200--Sobic006G091300 Sobic004G055500 Sobic004G055500 Sobic004G301200--Sobic004G055500 Sobic004G301200--Sobic004G144400 Sobic003G085000 Sobic003G085000 Sobic004G301200--Sobic003G085000 Sobic001G424300 Sobic001G424300 Sobic004G301200--Sobic001G424300 Sobic002G424100 Sobic002G424100 Sobic004G301200--Sobic002G424100 Sobic003G162900 Sobic003G162900 Sobic004G301200--Sobic003G162900 Sobic003G267500 Sobic003G267500 Sobic004G301200--Sobic003G267500 Sobic009G092900--Sobic004G003900 Sobic009G092900--Sobic008G090900 Sobic009G092900--Sobic003G045300 Sobic009G092900--Sobic002G181132 Sobic005G117300 Sobic005G117300 Sobic009G092900--Sobic005G117300 Sobic004G079800 Sobic004G079800 Sobic009G092900--Sobic004G079800 Sobic009G092900--Sobic003G128400 Sobic009G092900--Sobic001G375000 Sobic001G346600 Sobic001G346600 Sobic009G092900--Sobic001G346600 Sobic006G128300 Sobic006G128300 Sobic002G218500--Sobic006G128300 Sobic006G031800 Sobic006G031800 Sobic002G218500--Sobic006G031800 Sobic006G038500 Sobic006G038500 Sobic002G218500--Sobic006G038500 Sobic001G043800 Sobic001G043800 Sobic002G218500--Sobic001G043800 Sobic002G431300 Sobic002G431300 Sobic002G218500--Sobic002G431300 Sobic007G029700 Sobic007G029700 Sobic002G218500--Sobic007G029700 Sobic001G516901 Sobic001G516901 Sobic002G218500--Sobic001G516901 Sobic002G218500--Sobic004G079800 Sobic005G084800 Sobic005G084800 Sobic002G218500--Sobic005G084800 Sobic003G168100 Sobic003G168100 Sobic009G129100--Sobic003G168100 Sobic005G167700 Sobic005G167700 Sobic009G129100--Sobic005G167700 Sobic003G067100 Sobic003G067100 Sobic009G129100--Sobic003G067100 Sobic010G126000 Sobic010G126000 Sobic009G129100--Sobic010G126000 Sobic003G234900 Sobic003G234900 Sobic009G129100--Sobic003G234900 Sobic003G120300 Sobic003G120300 Sobic009G129100--Sobic003G120300 Sobic001G275300 Sobic001G275300 Sobic009G129100--Sobic001G275300 Sobic004G185800 Sobic004G185800 Sobic009G129100--Sobic004G185800 Sobic009G132700 Sobic009G132700 Sobic009G129100--Sobic009G132700
Octagon: transcription factors


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