Gene annotation
Transcriptome id Sobic.008G067100.2,Sobic.008G067100.3,Sobic.008G067100.1
Synonym TH1, THIE, Sb08g005560, TH-1
Functional annotation phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed
UniProt A0A1Z5R530 , A0A1Z5R5Z6 , C5YTC8
Pfam PF02581 PF08543 PF00294 PF02581
Panther DB PTHR20858 PTHR20858:SF17
NCBI CDD KOG2598; Phosphomethylpyrimidine kinase
KEGG Orthology K14153; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase
Gene Ontology GO:0009228; thiamine biosynthetic process GO:0004789thiamine-phosphate diphosphorylase activity


Orthologs (automatic annotation)
TAIR AT1G22940 : thiamin biosynthesis protein, putative
RAP-DB (Rice) LOC_Os12g09000.1 : phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed
MaizeGDB (Corn) Zm00025a040672 , Zm00025a025693
Brachypodium KQJ91935
Barley HORVU6Hr1G028820.1 , HORVU6Hr1G028820.2 , HORVU6Hr1G028820.3 , HORVU6Hr1G028820.4 , HORVU6Hr1G028820.5 , HORVU6Hr1G028820.6 , HORVU6Hr1G028820.7 , HORVU6Hr1G028820.8 , HORVU6Hr1G028820.9 , HORVU6Hr1G028820.10 , HORVU6Hr1G028820.11
Wheat TraesCS6D02G136300 , TraesCS6A02G147000 , TraesCS6B02G175200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G067100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G090900 expressed protein -
2 Sobic.007G095500 expressed protein -
3 Sobic.004G144400 riboflavin biosynthesis protein ribD, putative, expressed K11752: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
4 Sobic.002G156100 phosphoglycerate mutase, putative, expressed -
5 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
6 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
7 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
8 Sobic.004G208600 glycine-rich protein, putative, expressed -
9 Sobic.002G378000 amidase family protein, putative, expressed -
10 Sobic.002G181132 - -
11 Sobic.001G494500 kinase, pfkB family, putative, expressed -
12 Sobic.006G217000 imidazoleglycerol-phosphate dehydratase, putative, expressed K01693: imidazoleglycerol-phosphate dehydratase
13 Sobic.001G424300 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K08081: tropinone reductase I
14 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
15 Sobic.003G085000 sufB/sufD domain containing protein, putative, expressed K09015: Fe-S cluster assembly protein SufD
16 Sobic.010G086900 OsFBX187 - F-box domain containing protein, expressed -
17 Sobic.004G225600 - -
18 Sobic.001G401700 aminotransferase, classes I and II, domain containing protein, expressed K10206: LL-diaminopimelate aminotransferase
19 Sobic.004G019500 pentatricopeptide, putative, expressed -
20 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase


Gene co-expression network
sample Sobic008G067100 Sobic008G067100 Sobic008G090900 Sobic008G090900 Sobic008G067100--Sobic008G090900 Sobic007G095500 Sobic007G095500 Sobic008G067100--Sobic007G095500 Sobic004G144400 Sobic004G144400 Sobic008G067100--Sobic004G144400 Sobic002G156100 Sobic002G156100 Sobic008G067100--Sobic002G156100 Sobic001G382800 Sobic001G382800 Sobic008G067100--Sobic001G382800 Sobic004G003900 Sobic004G003900 Sobic008G067100--Sobic004G003900 Sobic003G128400 Sobic003G128400 Sobic008G067100--Sobic003G128400 Sobic004G208600 Sobic004G208600 Sobic008G067100--Sobic004G208600 Sobic002G378000 Sobic002G378000 Sobic008G067100--Sobic002G378000 Sobic008G090900--Sobic004G003900 Sobic009G092900 Sobic009G092900 Sobic008G090900--Sobic009G092900 Sobic002G181132 Sobic002G181132 Sobic008G090900--Sobic002G181132 Sobic008G090900--Sobic001G382800 Sobic008G090900--Sobic008G067100 Sobic003G045300 Sobic003G045300 Sobic008G090900--Sobic003G045300 Sobic001G375000 Sobic001G375000 Sobic008G090900--Sobic001G375000 Sobic008G090900--Sobic003G128400 Sobic006G088000 Sobic006G088000 Sobic008G090900--Sobic006G088000 Sobic007G095500--Sobic008G067100 Sobic007G095500--Sobic004G208600 Sobic004G225600 Sobic004G225600 Sobic007G095500--Sobic004G225600 Sobic007G095500--Sobic001G382800 Sobic002G293600 Sobic002G293600 Sobic007G095500--Sobic002G293600 Sobic002G343400 Sobic002G343400 Sobic007G095500--Sobic002G343400 Sobic007G095500--Sobic008G090900 Sobic001G494500 Sobic001G494500 Sobic007G095500--Sobic001G494500 Sobic006G058100 Sobic006G058100 Sobic007G095500--Sobic006G058100 Sobic004G019500 Sobic004G019500 Sobic004G144400--Sobic004G019500 Sobic004G144400--Sobic008G067100 Sobic004G144400--Sobic008G090900 Sobic004G144400--Sobic004G003900 Sobic004G144400--Sobic002G181132 Sobic004G301200 Sobic004G301200 Sobic004G144400--Sobic004G301200 Sobic004G144400--Sobic009G092900 Sobic002G218500 Sobic002G218500 Sobic004G144400--Sobic002G218500 Sobic009G129100 Sobic009G129100 Sobic004G144400--Sobic009G129100 Sobic003G162800 Sobic003G162800 Sobic002G156100--Sobic003G162800 Sobic002G156100--Sobic001G375000 Sobic002G156100--Sobic003G128400 Sobic002G156100--Sobic001G382800 Sobic002G156100--Sobic003G045300 Sobic010G255100 Sobic010G255100 Sobic002G156100--Sobic010G255100 Sobic002G156100--Sobic008G067100 Sobic005G014700 Sobic005G014700 Sobic002G156100--Sobic005G014700 Sobic001G424300 Sobic001G424300 Sobic002G156100--Sobic001G424300 Sobic001G382800--Sobic010G255100 Sobic001G382800--Sobic003G128400 Sobic001G382800--Sobic008G090900 Sobic001G003900 Sobic001G003900 Sobic001G382800--Sobic001G003900 Sobic001G382800--Sobic002G156100 Sobic001G382800--Sobic001G375000 Sobic001G382800--Sobic006G088000 Sobic001G382800--Sobic002G293600 Sobic001G382800--Sobic003G045300 Sobic004G003900--Sobic001G375000 Sobic004G003900--Sobic008G090900 Sobic004G003900--Sobic003G128400 Sobic004G003900--Sobic009G092900 Sobic004G003900--Sobic002G181132 Sobic004G003900--Sobic003G045300 Sobic004G003900--Sobic003G162800 Sobic004G003900--Sobic006G088000 Sobic004G003900--Sobic001G003900 Sobic003G128400--Sobic001G375000 Sobic007G101300 Sobic007G101300 Sobic003G128400--Sobic007G101300 Sobic003G128400--Sobic003G045300 Sobic005G184300 Sobic005G184300 Sobic003G128400--Sobic005G184300 Sobic003G128400--Sobic004G003900 Sobic006G055800 Sobic006G055800 Sobic003G128400--Sobic006G055800 Sobic003G128400--Sobic002G156100 Sobic002G297400 Sobic002G297400 Sobic003G128400--Sobic002G297400 Sobic003G128400--Sobic010G255100 Sobic004G208600--Sobic004G225600 Sobic001G384800 Sobic001G384800 Sobic004G208600--Sobic001G384800 Sobic004G208600--Sobic007G095500 Sobic001G202000 Sobic001G202000 Sobic004G208600--Sobic001G202000 Sobic001G514100 Sobic001G514100 Sobic004G208600--Sobic001G514100 Sobic004G208600--Sobic008G090900 Sobic001G099000 Sobic001G099000 Sobic004G208600--Sobic001G099000 Sobic007G116100 Sobic007G116100 Sobic004G208600--Sobic007G116100 Sobic004G255500 Sobic004G255500 Sobic004G208600--Sobic004G255500 Sobic002G378000--Sobic008G067100 Sobic010G086900 Sobic010G086900 Sobic002G378000--Sobic010G086900 Sobic001G281500 Sobic001G281500 Sobic002G378000--Sobic001G281500 Sobic003G310100 Sobic003G310100 Sobic002G378000--Sobic003G310100 Sobic009G104700 Sobic009G104700 Sobic002G378000--Sobic009G104700 Sobic002G378000--Sobic003G128400 Sobic002G378000--Sobic007G101300 Sobic002G378000--Sobic005G184300 Sobic002G378000--Sobic001G424300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.