Gene annotation
Transcriptome id Sobic.008G090900.1
Synonym Sb08g011730
Functional annotation expressed protein
UniProt C5YNH0
Pfam PF11891
Panther DB PTHR31038 PTHR31038:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G24690 : Protein of unknown function (DUF3411)
RAP-DB (Rice) LOC_Os12g18630.1 : expressed protein
MaizeGDB (Corn) Zm00025a024860 , Zm00025a054255
Brachypodium KQJ91678
Barley HORVU5Hr1G030040.12 , HORVU5Hr1G030040.10 , HORVU5Hr1G030040.11 , HORVU5Hr1G030040.1 , HORVU5Hr1G030040.2 , HORVU5Hr1G030040.3 , HORVU5Hr1G030040.4 , HORVU5Hr1G030040.6 , HORVU5Hr1G030040.7 , HORVU5Hr1G030040.8 , HORVU5Hr1G030040.9
Wheat TraesCS7A02G335500 , TraesCS5B02G110100 , TraesCS5D02G123000 , TraesCS5A02G110400
Populus -


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cDNA sequences
Sobic.008G090900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
2 Sobic.009G092900 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
3 Sobic.002G181132 - -
4 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
5 Sobic.008G067100 phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed K14153: hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase
6 Sobic.003G045300 cobalt ion transporter, putative, expressed -
7 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
8 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
9 Sobic.006G088000 translocon Tic40, putative, expressed -
10 Sobic.004G144400 riboflavin biosynthesis protein ribD, putative, expressed K11752: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
11 Sobic.009G085200 glyoxalase family protein, putative, expressed K01759: GLO1, lactoylglutathione lyase
12 Sobic.001G003900 pentatricopeptide, putative, expressed -
13 Sobic.005G117300 ABC transporter, ATP-binding protein, putative, expressed -
14 Sobic.006G155100 expressed protein -
15 Sobic.001G433100 expressed protein -
16 Sobic.001G401700 aminotransferase, classes I and II, domain containing protein, expressed K10206: LL-diaminopimelate aminotransferase
17 Sobic.003G085000 sufB/sufD domain containing protein, putative, expressed K09015: Fe-S cluster assembly protein SufD
18 Sobic.002G109000 tetratricopeptide repeat containing protein, putative, expressed -
19 Sobic.004G208600 glycine-rich protein, putative, expressed -
20 Sobic.002G156100 phosphoglycerate mutase, putative, expressed -


Gene co-expression network
sample Sobic008G090900 Sobic008G090900 Sobic004G003900 Sobic004G003900 Sobic008G090900--Sobic004G003900 Sobic009G092900 Sobic009G092900 Sobic008G090900--Sobic009G092900 Sobic002G181132 Sobic002G181132 Sobic008G090900--Sobic002G181132 Sobic001G382800 Sobic001G382800 Sobic008G090900--Sobic001G382800 Sobic008G067100 Sobic008G067100 Sobic008G090900--Sobic008G067100 Sobic003G045300 Sobic003G045300 Sobic008G090900--Sobic003G045300 Sobic001G375000 Sobic001G375000 Sobic008G090900--Sobic001G375000 Sobic003G128400 Sobic003G128400 Sobic008G090900--Sobic003G128400 Sobic006G088000 Sobic006G088000 Sobic008G090900--Sobic006G088000 Sobic004G003900--Sobic001G375000 Sobic004G003900--Sobic008G090900 Sobic004G003900--Sobic003G128400 Sobic004G003900--Sobic009G092900 Sobic004G003900--Sobic002G181132 Sobic004G003900--Sobic003G045300 Sobic003G162800 Sobic003G162800 Sobic004G003900--Sobic003G162800 Sobic004G003900--Sobic006G088000 Sobic001G003900 Sobic001G003900 Sobic004G003900--Sobic001G003900 Sobic009G092900--Sobic004G003900 Sobic009G092900--Sobic008G090900 Sobic009G092900--Sobic003G045300 Sobic009G092900--Sobic002G181132 Sobic005G117300 Sobic005G117300 Sobic009G092900--Sobic005G117300 Sobic004G079800 Sobic004G079800 Sobic009G092900--Sobic004G079800 Sobic009G092900--Sobic003G128400 Sobic009G092900--Sobic001G375000 Sobic001G346600 Sobic001G346600 Sobic009G092900--Sobic001G346600 Sobic006G166500 Sobic006G166500 Sobic002G181132--Sobic006G166500 Sobic002G181132--Sobic003G045300 Sobic002G181132--Sobic004G003900 Sobic002G181132--Sobic001G375000 Sobic002G181132--Sobic003G162800 Sobic002G181132--Sobic008G090900 Sobic002G181132--Sobic009G092900 Sobic003G345900 Sobic003G345900 Sobic002G181132--Sobic003G345900 Sobic002G156100 Sobic002G156100 Sobic002G181132--Sobic002G156100 Sobic010G255100 Sobic010G255100 Sobic001G382800--Sobic010G255100 Sobic001G382800--Sobic003G128400 Sobic001G382800--Sobic008G090900 Sobic001G382800--Sobic001G003900 Sobic001G382800--Sobic002G156100 Sobic001G382800--Sobic001G375000 Sobic001G382800--Sobic006G088000 Sobic002G293600 Sobic002G293600 Sobic001G382800--Sobic002G293600 Sobic001G382800--Sobic003G045300 Sobic008G067100--Sobic008G090900 Sobic007G095500 Sobic007G095500 Sobic008G067100--Sobic007G095500 Sobic004G144400 Sobic004G144400 Sobic008G067100--Sobic004G144400 Sobic008G067100--Sobic002G156100 Sobic008G067100--Sobic001G382800 Sobic008G067100--Sobic004G003900 Sobic008G067100--Sobic003G128400 Sobic004G208600 Sobic004G208600 Sobic008G067100--Sobic004G208600 Sobic002G378000 Sobic002G378000 Sobic008G067100--Sobic002G378000 Sobic003G045300--Sobic003G128400 Sobic003G045300--Sobic001G375000 Sobic003G045300--Sobic001G003900 Sobic003G045300--Sobic002G181132 Sobic003G045300--Sobic009G092900 Sobic003G045300--Sobic004G003900 Sobic005G184300 Sobic005G184300 Sobic003G045300--Sobic005G184300 Sobic003G045300--Sobic003G162800 Sobic003G045300--Sobic008G090900 Sobic001G375000--Sobic003G128400 Sobic001G375000--Sobic003G162800 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic001G375000--Sobic003G045300 Sobic010G027200 Sobic010G027200 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic006G237100 Sobic006G237100 Sobic001G375000--Sobic006G237100 Sobic001G375000--Sobic002G156100 Sobic003G128400--Sobic001G375000 Sobic007G101300 Sobic007G101300 Sobic003G128400--Sobic007G101300 Sobic003G128400--Sobic003G045300 Sobic003G128400--Sobic005G184300 Sobic003G128400--Sobic004G003900 Sobic006G055800 Sobic006G055800 Sobic003G128400--Sobic006G055800 Sobic003G128400--Sobic002G156100 Sobic002G297400 Sobic002G297400 Sobic003G128400--Sobic002G297400 Sobic003G128400--Sobic010G255100 Sobic006G088000--Sobic001G375000 Sobic006G088000--Sobic003G128400 Sobic006G088000--Sobic004G003900 Sobic006G088000--Sobic001G382800 Sobic006G088000--Sobic003G162800 Sobic006G088000--Sobic003G045300 Sobic001G249400 Sobic001G249400 Sobic006G088000--Sobic001G249400 Sobic006G088000--Sobic010G255100 Sobic006G088000--Sobic008G090900
Octagon: transcription factors


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