Gene annotation
Transcriptome id Sobic.002G109000.1
Synonym Sb02g009290
Functional annotation tetratricopeptide repeat containing protein, putative, expressed
UniProt C5X3N4
Pfam PF14559
Panther DB PTHR26312 PTHR26312:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G78915 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g18720.1 : tetratricopeptide repeat containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045627
Brachypodium KQK20157 , KQK20156
Barley HORVU2Hr1G105830.2 , HORVU2Hr1G105830.5 , HORVU2Hr1G105830.30 , HORVU2Hr1G105830.28 , HORVU2Hr1G105830.29 , HORVU2Hr1G105830.20 , HORVU2Hr1G105830.21 , HORVU2Hr1G105830.22 , HORVU2Hr1G105830.23 , HORVU2Hr1G105830.24 , HORVU2Hr1G105830.25 , HORVU2Hr1G105830.26 , HORVU2Hr1G105830.27 , HORVU2Hr1G105830.19 , HORVU2Hr1G105830.18 , HORVU2Hr1G105830.15 , HORVU2Hr1G105830.14 , HORVU2Hr1G105830.17 , HORVU2Hr1G105830.16 , HORVU2Hr1G105830.11 , HORVU2Hr1G105830.10 , HORVU2Hr1G105830.13 , HORVU2Hr1G105830.12 , HORVU2Hr1G105830.9 , HORVU2Hr1G105830.8 , HORVU2Hr1G105830.1 , HORVU2Hr1G105830.3 , HORVU2Hr1G105830.4 , HORVU2Hr1G105830.7 , HORVU2Hr1G105830.6
Wheat TraesCS2B02G470800
Populus -


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cDNA sequences
Sobic.002G109000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
2 Sobic.001G099000 expressed protein -
3 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
4 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
5 Sobic.003G324700 expressed protein -
6 Sobic.001G368500 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
7 Sobic.003G045300 cobalt ion transporter, putative, expressed -
8 Sobic.002G081500 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
9 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
10 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
11 Sobic.005G184300 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
12 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
13 Sobic.001G495300 expressed protein -
14 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
15 Sobic.009G085200 glyoxalase family protein, putative, expressed K01759: GLO1, lactoylglutathione lyase
16 Sobic.002G158800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide repeat containing protein, putative, expressed -
17 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
18 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
19 Sobic.006G106400 OsDegp5 - Putative Deg protease homologue, expressed -
20 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1


Gene co-expression network
sample Sobic002G109000 Sobic002G109000 Sobic006G055800 Sobic006G055800 Sobic002G109000--Sobic006G055800 Sobic001G099000 Sobic001G099000 Sobic002G109000--Sobic001G099000 Sobic002G297400 Sobic002G297400 Sobic002G109000--Sobic002G297400 Sobic001G122400 Sobic001G122400 Sobic002G109000--Sobic001G122400 Sobic003G324700 Sobic003G324700 Sobic002G109000--Sobic003G324700 Sobic001G368500 Sobic001G368500 Sobic002G109000--Sobic001G368500 Sobic003G045300 Sobic003G045300 Sobic002G109000--Sobic003G045300 Sobic002G081500 Sobic002G081500 Sobic002G109000--Sobic002G081500 Sobic003G128400 Sobic003G128400 Sobic002G109000--Sobic003G128400 Sobic003G432500 Sobic003G432500 Sobic006G055800--Sobic003G432500 Sobic006G055800--Sobic003G324700 Sobic005G002900 Sobic005G002900 Sobic006G055800--Sobic005G002900 Sobic001G469933 Sobic001G469933 Sobic006G055800--Sobic001G469933 Sobic006G055800--Sobic001G368500 Sobic009G148500 Sobic009G148500 Sobic006G055800--Sobic009G148500 Sobic002G152800 Sobic002G152800 Sobic006G055800--Sobic002G152800 Sobic001G083100 Sobic001G083100 Sobic006G055800--Sobic001G083100 Sobic005G110400 Sobic005G110400 Sobic006G055800--Sobic005G110400 Sobic002G158800 Sobic002G158800 Sobic001G099000--Sobic002G158800 Sobic005G184300 Sobic005G184300 Sobic001G099000--Sobic005G184300 Sobic007G015300 Sobic007G015300 Sobic001G099000--Sobic007G015300 Sobic001G099000--Sobic002G081500 Sobic004G255500 Sobic004G255500 Sobic001G099000--Sobic004G255500 Sobic010G027200 Sobic010G027200 Sobic001G099000--Sobic010G027200 Sobic001G099000--Sobic002G109000 Sobic003G373300 Sobic003G373300 Sobic001G099000--Sobic003G373300 Sobic006G166000 Sobic006G166000 Sobic001G099000--Sobic006G166000 Sobic004G179200 Sobic004G179200 Sobic002G297400--Sobic004G179200 Sobic002G297400--Sobic006G055800 Sobic002G297400--Sobic001G469933 Sobic006G256600 Sobic006G256600 Sobic002G297400--Sobic006G256600 Sobic002G297400--Sobic001G122400 Sobic002G297400--Sobic005G184300 Sobic002G297400--Sobic003G324700 Sobic003G439000 Sobic003G439000 Sobic002G297400--Sobic003G439000 Sobic006G107600 Sobic006G107600 Sobic002G297400--Sobic006G107600 Sobic003G386300 Sobic003G386300 Sobic001G122400--Sobic003G386300 Sobic004G335800 Sobic004G335800 Sobic001G122400--Sobic004G335800 Sobic001G527100 Sobic001G527100 Sobic001G122400--Sobic001G527100 Sobic001G122400--Sobic003G324700 Sobic001G122400--Sobic001G469933 Sobic001G240000 Sobic001G240000 Sobic001G122400--Sobic001G240000 Sobic001G122400--Sobic001G368500 Sobic002G198000 Sobic002G198000 Sobic001G122400--Sobic002G198000 Sobic001G391400 Sobic001G391400 Sobic001G122400--Sobic001G391400 Sobic003G324700--Sobic001G122400 Sobic003G324700--Sobic001G368500 Sobic003G324700--Sobic001G469933 Sobic003G324700--Sobic004G335800 Sobic003G324700--Sobic006G055800 Sobic003G324700--Sobic002G152800 Sobic003G324700--Sobic003G386300 Sobic003G324700--Sobic003G432500 Sobic003G324700--Sobic001G527100 Sobic001G368500--Sobic003G324700 Sobic001G368500--Sobic005G110400 Sobic001G368500--Sobic003G432500 Sobic001G368500--Sobic001G469933 Sobic001G368500--Sobic001G122400 Sobic008G073100 Sobic008G073100 Sobic001G368500--Sobic008G073100 Sobic002G401800 Sobic002G401800 Sobic001G368500--Sobic002G401800 Sobic003G271900 Sobic003G271900 Sobic001G368500--Sobic003G271900 Sobic005G143500 Sobic005G143500 Sobic001G368500--Sobic005G143500 Sobic003G045300--Sobic003G128400 Sobic001G375000 Sobic001G375000 Sobic003G045300--Sobic001G375000 Sobic001G003900 Sobic001G003900 Sobic003G045300--Sobic001G003900 Sobic002G181132 Sobic002G181132 Sobic003G045300--Sobic002G181132 Sobic009G092900 Sobic009G092900 Sobic003G045300--Sobic009G092900 Sobic004G003900 Sobic004G003900 Sobic003G045300--Sobic004G003900 Sobic003G045300--Sobic005G184300 Sobic003G162800 Sobic003G162800 Sobic003G045300--Sobic003G162800 Sobic008G090900 Sobic008G090900 Sobic003G045300--Sobic008G090900 Sobic002G081500--Sobic001G099000 Sobic002G081500--Sobic001G469933 Sobic002G081500--Sobic005G184300 Sobic002G081500--Sobic006G055800 Sobic002G081500--Sobic002G297400 Sobic002G081500--Sobic005G110400 Sobic004G020800 Sobic004G020800 Sobic002G081500--Sobic004G020800 Sobic001G037500 Sobic001G037500 Sobic002G081500--Sobic001G037500 Sobic002G081500--Sobic002G158800 Sobic003G128400--Sobic001G375000 Sobic007G101300 Sobic007G101300 Sobic003G128400--Sobic007G101300 Sobic003G128400--Sobic003G045300 Sobic003G128400--Sobic005G184300 Sobic003G128400--Sobic004G003900 Sobic003G128400--Sobic006G055800 Sobic002G156100 Sobic002G156100 Sobic003G128400--Sobic002G156100 Sobic003G128400--Sobic002G297400 Sobic010G255100 Sobic010G255100 Sobic003G128400--Sobic010G255100
Octagon: transcription factors


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