Hb_002342_040

Information

Type -
Description -
Location Contig2342: 44456-44665
Sequence    

Annotation

kegg
ID mdm:103422452
description wall-associated receptor kinase 1-like
nr
ID AJD09661.1
description FERONIA, partial [Arabis alpina]
swissprot
ID -
description -
trembl
ID A0A0B4ULT7
description FERONIA (Fragment) OS=Braya humilis GN=FERONIA PE=4 SV=1
Gene Ontology
ID GO:0004674
description partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002342_040 0.0 - - FERONIA, partial [Arabis alpina]
2 Hb_122911_010 0.0072036307 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
3 Hb_005426_010 0.0103864321 - - polyprotein [Oryza australiensis]
4 Hb_007592_010 0.010540616 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
5 Hb_008092_010 0.0126871174 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
6 Hb_000045_270 0.0128902393 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003702_020 0.0131309641 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
8 Hb_000370_050 0.0131664949 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
9 Hb_010452_030 0.0155823022 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
10 Hb_001100_020 0.0169001181 - - -
11 Hb_042239_010 0.0174443348 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
12 Hb_048653_010 0.0187068377 - - PREDICTED: mavicyanin [Jatropha curcas]
13 Hb_013654_020 0.0188490935 - - putative prolin-rich extensin-like receptor protein kinase family protein [Zea mays]
14 Hb_002400_110 0.0220804092 - - conserved hypothetical protein [Ricinus communis]
15 Hb_072149_010 0.0223224776 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
16 Hb_008221_010 0.0224849766 - - hypothetical protein JCGZ_10961 [Jatropha curcas]
17 Hb_004944_030 0.0240203358 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
18 Hb_001136_140 0.0248729479 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
19 Hb_008953_020 0.0274048694 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
20 Hb_000135_040 0.02759684 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]

Gene co-expression network

sample Hb_002342_040 Hb_002342_040 Hb_122911_010 Hb_122911_010 Hb_002342_040--Hb_122911_010 Hb_005426_010 Hb_005426_010 Hb_002342_040--Hb_005426_010 Hb_007592_010 Hb_007592_010 Hb_002342_040--Hb_007592_010 Hb_008092_010 Hb_008092_010 Hb_002342_040--Hb_008092_010 Hb_000045_270 Hb_000045_270 Hb_002342_040--Hb_000045_270 Hb_003702_020 Hb_003702_020 Hb_002342_040--Hb_003702_020 Hb_122911_010--Hb_000045_270 Hb_010452_030 Hb_010452_030 Hb_122911_010--Hb_010452_030 Hb_001100_020 Hb_001100_020 Hb_122911_010--Hb_001100_020 Hb_002400_110 Hb_002400_110 Hb_122911_010--Hb_002400_110 Hb_072149_010 Hb_072149_010 Hb_122911_010--Hb_072149_010 Hb_005426_010--Hb_007592_010 Hb_005426_010--Hb_008092_010 Hb_005426_010--Hb_003702_020 Hb_000370_050 Hb_000370_050 Hb_005426_010--Hb_000370_050 Hb_042239_010 Hb_042239_010 Hb_005426_010--Hb_042239_010 Hb_048653_010 Hb_048653_010 Hb_005426_010--Hb_048653_010 Hb_007592_010--Hb_008092_010 Hb_007592_010--Hb_003702_020 Hb_007592_010--Hb_000370_050 Hb_007592_010--Hb_042239_010 Hb_007592_010--Hb_048653_010 Hb_008092_010--Hb_003702_020 Hb_008092_010--Hb_000370_050 Hb_008092_010--Hb_042239_010 Hb_008092_010--Hb_048653_010 Hb_000045_270--Hb_010452_030 Hb_000045_270--Hb_001100_020 Hb_000045_270--Hb_002400_110 Hb_000045_270--Hb_072149_010 Hb_004944_030 Hb_004944_030 Hb_000045_270--Hb_004944_030 Hb_003702_020--Hb_000370_050 Hb_003702_020--Hb_042239_010 Hb_003702_020--Hb_048653_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.08791 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.444499 0

CAGE analysis