Hb_002001_040

Information

Type -
Description -
Location Contig2001: 51668-52551
Sequence    

Annotation

kegg
ID pop:POPTR_0017s08760g
description hypothetical protein
nr
ID KDO57570.1
description hypothetical protein CISIN_1g044945mg, partial [Citrus sinensis]
swissprot
ID P0C7R1
description Pentatricopeptide repeat-containing protein DWY1, chloroplastic OS=Arabidopsis thaliana GN=DYW1 PE=1 SV=1
trembl
ID M0U4N4
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0016556
description pentatricopeptide repeat-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002001_040 0.0 - - hypothetical protein CISIN_1g044945mg, partial [Citrus sinensis]
2 Hb_000207_410 0.0017489016 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000537_110 0.0025125813 - - -
4 Hb_000465_200 0.0065149354 - - PREDICTED: protein NSP-INTERACTING KINASE 1 [Jatropha curcas]
5 Hb_000163_120 0.041629745 - - -
6 Hb_003492_030 0.0722733724 - - -
7 Hb_003866_010 0.1253476304 - - Polyprotein, putative [Solanum demissum]
8 Hb_000445_340 0.1340873256 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000053_090 0.1379156123 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Populus euphratica]
10 Hb_072639_010 0.1380871557 - - JHL22C18.10 [Jatropha curcas]
11 Hb_008014_080 0.1391789654 - - PREDICTED: uncharacterized protein LOC103848614 [Brassica rapa]
12 Hb_000212_340 0.1402666829 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000200_260 0.1441302202 - - PREDICTED: uncharacterized protein LOC104232531 isoform X2 [Nicotiana sylvestris]
14 Hb_001184_120 0.2857519303 - - hypothetical protein CICLE_v10025281mg [Citrus clementina]
15 Hb_001433_060 0.2884818733 - - hypothetical protein JCGZ_23291 [Jatropha curcas]
16 Hb_002485_020 0.3336952013 - - metal transport family protein [Populus trichocarpa]
17 Hb_003811_010 0.3383579749 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
18 Hb_034589_010 0.3548537567 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
19 Hb_010555_020 0.3676369089 - - hypothetical protein JCGZ_06771 [Jatropha curcas]
20 Hb_000680_040 0.370903767 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002001_040 Hb_002001_040 Hb_000207_410 Hb_000207_410 Hb_002001_040--Hb_000207_410 Hb_000537_110 Hb_000537_110 Hb_002001_040--Hb_000537_110 Hb_000465_200 Hb_000465_200 Hb_002001_040--Hb_000465_200 Hb_000163_120 Hb_000163_120 Hb_002001_040--Hb_000163_120 Hb_003492_030 Hb_003492_030 Hb_002001_040--Hb_003492_030 Hb_003866_010 Hb_003866_010 Hb_002001_040--Hb_003866_010 Hb_000207_410--Hb_000537_110 Hb_000207_410--Hb_000465_200 Hb_000207_410--Hb_000163_120 Hb_000207_410--Hb_003492_030 Hb_000207_410--Hb_003866_010 Hb_000537_110--Hb_000465_200 Hb_000537_110--Hb_000163_120 Hb_000537_110--Hb_003492_030 Hb_000537_110--Hb_003866_010 Hb_000465_200--Hb_000163_120 Hb_000465_200--Hb_003492_030 Hb_000465_200--Hb_003866_010 Hb_000163_120--Hb_003492_030 Hb_000163_120--Hb_003866_010 Hb_003492_030--Hb_003866_010 Hb_000445_340 Hb_000445_340 Hb_003492_030--Hb_000445_340 Hb_000053_090 Hb_000053_090 Hb_003492_030--Hb_000053_090 Hb_072639_010 Hb_072639_010 Hb_003492_030--Hb_072639_010 Hb_003866_010--Hb_000445_340 Hb_003866_010--Hb_000053_090 Hb_003866_010--Hb_072639_010 Hb_008014_080 Hb_008014_080 Hb_003866_010--Hb_008014_080 Hb_000212_340 Hb_000212_340 Hb_003866_010--Hb_000212_340 Hb_000200_260 Hb_000200_260 Hb_003866_010--Hb_000200_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0326202 0 0.0805341 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis